RNA id: XM_036951583.1


Basic Information

Item Value
RNA id XM_036951583.1
length 2587
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110496984
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 7585227 ~ 7597388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCCATTCTGCGGTAGGAAGCACCTGTCTACGTCACATACAGCACCTGTTTCGGGgtggggtctgtctgtctccgcaGCCAGCAAAGCAAATTCCCGAAAGGTGTCGGACAAGGAAGACAaaacacaagacagacagaaCAATGGGGAGTCTGTTTAGGAGGATAATTTAGGTCTTTCCTTTTTTTTAATAGATAATAAATTGGGCGAGATAATATTTATTAGTTTAATGGATCAATCATCAACGATGAGGAGGTTGATACTGGCCGCGTTCGTCCTCTCTTCCCTACCGACAGAGGTGCAGAGCGTCCAGGTGAATGTTCCTCAGACAGAGAGGAGTACAGCTCTGTTTGCCTCCGTCATCCTGAAGTGTGATTACTCCACCTCCGCTAACCAGCAGGATGTCCAGGTCACCTGGCGATACAAGTCCTTCTGCAAGGACCCCATCCTGGAGTATTACTCCCAAGCGTACCAGAATGCTCTGCAGCTGGGTCAGGACCCGGCCAATGACTGCCCCGACCGCCAGCGCACGGTTAGGATCATCGTCCAGAAGAGAGGCTCCAACGAGGCCATACTGGGCACAGAGTACCGGGAACGCAAGATCTCCGTCCAGAACAAGGCTGACCTGGTGATCAATGAGATCATGTGGTGGGACAACGGAGTTTACTACTGTTCTGTGGAAGCCACGGGAGACACCAGCGGCGGCTTGGATGGCGTGATCCAACTCATGGTCTACAACTGGCTGACGGTGCTGTTCATAGTGATTGGAGCTCTGCTCCTCATCCTGCTCTTCTGTATCTGCTGCTGCCAGTGTTGTCCTCAGAGGTGCTGCTGCTACGTCCGCTGCCCCTGCTGCCCACAGACCTGCTGCTGTCCTGAGAAAGcggtGATGCAGCACAGGATGATGAAGGATGCCCAGAGGGCCATGGGTCCATGGATGGGAGGTCAGCCCATCTACAGCCCCATGAGCCACGGATCCTCACAGATGAACCCTCTGCTGTATGCAGGCTCCCAATCAGGGAAGAGCATCGCCATGGCCCCCATGCCCCTACCCCCTCCCCCATCTGGCTACAACATGCCCCCCAGTGTCCACGCTGCCAGCATCTACGGCAACCAACATCCCGGCAACAAGCAGATGCTGGACTACCTGGAGAGCCAGGTGAGGGGCATGGATGGGACCAGCCCCATGATGCAGCCCCAACCCCACCACCAGCAGCTCCAGATGATACCCCCTCCCCCTCAGCACATGATGCCCCAGCACGTCCCCTTCTCAGCGGGTCCTCCCAGCATGCTCTCTGGCCTGGACGACGGGGCCGTGGAGTACCGGGGGGTCATCCAGATGCCTCCCATCATAGAGCAGCCTGGACGAGGAGGTCGGAGAGGGGGCCAGCCGCCGCTTGCTCCTAAAACACGTCCACCCAGCTCCAGAGGAAGCAGCCGCAGCGAGAGTCGCTTCACCAGTCACCGTGACGACCGCAGCGAAGCCAGCGGGCGCCGTTACCCGTCGCCGTCAAGGAGCCGTGGCATGCCAAGGAGCTACAGTGAAGTCTTTCTGGACGGGGAGAGCCGGGGGGCGCGGGGTCGAATGGGTTCACGTGACGACCTCAGCGACAGGGTccctcgatcccgctccagagacgACCTGTTCGAGGAGCAGCGTCGCGCCCCACCTCCCAGCAACTACTCCCGCTCCCGCAGAGGGTCGTTCAGTTCAGATGAGGATGAAaacagcaggagaggagagggcagaggtcacaggagaggaggaggaggagagatgtatTCAGACATTCCGCCCAGCTATTCTGAATACGAGCCGGGACAGAAACCACCAAGGAGGAATGAGCGTTACTCTGTTAAAACTCTGCTTTAGTTAGTACACTGAATACACACTCCtaaacacaaaccacacacacacacaaaccacacacacacacactcacacaaccccTTCAAAAACATTTACCATCTGACAATGGCATTTGATCCATGCCTTCAATTACACACAATCATATAATCACGCAGATATGAAAGAATCACTCACAGACACACTAGTGCACACTACTTGCTTTCATCACTTCTTCCATTCAGGGAGCCTTTAATTAATGTGTCCCGCTACAGGGCAAGAGTTCTGGCAGGGGCACTGTGGTCATCTGATCTGGGCTCTCACTggctacctctcctctccttctgctgAATGGCATTACAACAGCCCCCTCTGCTGGTTGAACGCTCTCAGTGCAGATAAGTGCCCAATCTTGACAATCTGTTGTGCAAACAAAAGCTGTGTGTGCAGTACAGTAGTCAGCCAGTGAGTCAGCCCTCAACAGTAGATGAGCAGTTTGAAAGGCTCAGCAATGGGAAATCAGAGACTGTAGAAAGAGCTGAGGTTGGGCAATTTTGCAGAGCTAAACAACTGTCTCAGGTCACACTGTCAtgtcctcctccaccctctatcTCCTCATATTGTGCTATtctaattagaggtcgaccgattatggtttttcaacaccgataccgattattggaggaccaaaaaaagacgataccgattattggagggccaaaaaaagacggtaccgattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732327 lncRNA upstream 3913 7576818 ~ 7581314 (+) True LOC110495403
TU1732372 lncRNA upstream 91063 7493955 ~ 7494164 (+) True G1513892
TU1732369 lncRNA upstream 93983 7490621 ~ 7491244 (+) True G1513889
TU1732367 lncRNA upstream 104465 7480409 ~ 7480762 (+) True G1513887
TU1732360 lncRNA upstream 128196 7456247 ~ 7457031 (+) True G1513880
TU1732413 lncRNA downstream 9097 7606485 ~ 7607479 (+) False G1513921
TU1732411 lncRNA downstream 9293 7606681 ~ 7607479 (+) False G1513921
TU1732414 lncRNA downstream 9293 7606681 ~ 7607479 (+) True G1513921
TU1732402 lncRNA downstream 17483 7614871 ~ 7617337 (+) True LOC110495404
TU1732426 lncRNA downstream 38294 7635682 ~ 7635920 (+) True G1513930
XM_036951577.1 mRNA upstream 3926 7534691 ~ 7581301 (+) False LOC110495403
XM_036951578.1 mRNA upstream 3926 7534691 ~ 7581301 (+) False LOC110495403
XM_036951576.1 mRNA upstream 3926 7534692 ~ 7581301 (+) False LOC110495403
XM_036951579.1 mRNA upstream 3926 7534692 ~ 7581301 (+) False LOC110495403
XM_036951580.1 mRNA upstream 3926 7534692 ~ 7581301 (+) False LOC110495403
XM_036951584.1 mRNA downstream 3031 7600419 ~ 7617312 (+) False LOC110495404
XM_036951586.1 mRNA downstream 3032 7600420 ~ 7615795 (+) False LOC110495404
XM_036951585.1 mRNA downstream 3034 7600422 ~ 7617312 (+) False LOC110495404
XM_036951396.1 mRNA downstream 111286 7708674 ~ 7711968 (+) False LOC110518829
XR_005037363.1 mRNA downstream 118807 7716195 ~ 7733810 (+) False LOC118941082
TU1732350 other upstream 158256 7426583 ~ 7426971 (+) True G1513874
TU1731797 other upstream 488067 7088832 ~ 7097160 (+) True LOC110513752
TU1731799 other upstream 499508 7032610 ~ 7085719 (+) False LOC110513752
TU1731792 other upstream 558417 7026208 ~ 7026810 (+) True G1513452
TU1731618 other upstream 875179 6708659 ~ 6710048 (+) True LOC110516612
TU1732416 other downstream 22908 7620296 ~ 7621941 (+) True G1513922
TU1732464 other downstream 161360 7758748 ~ 7760971 (+) False LOC110511355
TU1732457 other downstream 196882 7794270 ~ 7801058 (+) True LOC110511355
TU1732572 other downstream 416472 8013860 ~ 8015030 (+) True G1514045
TU1732800 other downstream 749839 8347227 ~ 8412799 (+) True G1514180

Expression Profile