RNA id: TCONS_00047726


Basic Information

Item Value
RNA id TCONS_00047726
length 885
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_024051
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19733704 ~ 19752145 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTCAAATATACAAGACTACAAGCAAACGGAAATAACCTTTTGTTAACTTTCATTGTACCGCTAATTCGTTTTATGCACAGCTAAAGTTTAGAAAAAGCAACATGGACATCCGAAGGGATCTTCAAAATGAAGAGTCTAAAGCCTACAAGTTTATTCAGCAGTTCAGCTGGCAAGGACAACACAGCCGAACTATTTAAAGAAGTGGTCTAATGGTAAAATACCCGTGTGATGTGGTGAAAAACTGGCATTTCTACATCTTCGCTTACTGTAAAGTGGATGAACATCATCTGTGAGAAGAGTTGAATCATGATTTACGTTCGAAGAGAAAAGTTGAAATTCATTTTGATGGTGGCTGCTTTCATGATATCCATGGGCCTTGTCCTCAAACTCCTGCAAATTAATCCAGAAGTTACATTATCAAATTTAATAGAAAGGTCAGTGGATGAAATGCATTTAGTCCCGTCGAAACCTGATGTTGGTAAAAAGATGATGGAAATCAAACCTAATGTGCCTAAAGCCAAATGTGGCCTGGCCAAACCATGTCCTGCAGGTGGTTTGGCCTTTAAGATGTACAGCGGTGCAACTAATATAGTTGGACCCCAAATATGCTTTGATGGAAAAATGTTAATACAGAAAGAGACACGAGGTAACTGGCTTGGAATTAATATTGCTGTTATCAATGAAGAAACGGGTGAGCACGTCAAAACTGGCAGCTTCAATATGTGGACTGGAAAGGTTGAAGAGTTAATAGAGTTTCTGAAGTCAATAGAGGATGGTTCTTTTGTGCTGATTACCACTTTTGATGATCCATACACAAAGCTAAATGAGGAAGCAAGGACGCTTCTTGCAGAGCTTGGCAGTGCATTTATATCTAAAATCGGTT

Function

GO:

id name namespace
GO:0045721 negative regulation of gluconeogenesis biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-48 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and regulation of cell adhesion. Predicted to act upstream of or within negative regulation of gluconeogenesis. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000138851

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047713 lncRNA upstream 177475 19552326 ~ 19556276 (+) True XLOC_024044
TCONS_00049225 lncRNA upstream 288239 19443951 ~ 19445512 (+) True XLOC_024041
TCONS_00049224 lncRNA upstream 371664 19356344 ~ 19362087 (+) True XLOC_024040
TCONS_00049223 lncRNA upstream 809360 18920621 ~ 18924391 (+) False XLOC_024031
TCONS_00047734 lncRNA downstream 131368 19870872 ~ 19883530 (+) False XLOC_024054
TCONS_00049226 lncRNA downstream 247564 19987068 ~ 19987387 (+) False XLOC_024057
TCONS_00049039 lncRNA downstream 247575 19987079 ~ 19997540 (+) False XLOC_024057
TCONS_00049040 lncRNA downstream 247575 19987079 ~ 19998226 (+) True XLOC_024057
TCONS_00049229 lncRNA downstream 363761 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00047722 mRNA upstream 2496 19718504 ~ 19731255 (+) False XLOC_024050
TCONS_00047723 mRNA upstream 3000 19720228 ~ 19730751 (+) True XLOC_024050
TCONS_00047720 mRNA upstream 18615 19695652 ~ 19715136 (+) False XLOC_024049
TCONS_00047721 mRNA upstream 19254 19710619 ~ 19714497 (+) True XLOC_024049
TCONS_00047718 mRNA upstream 39850 19680962 ~ 19693901 (+) False XLOC_024048
TCONS_00047729 mRNA downstream 161 19739665 ~ 19752145 (+) True XLOC_024051
TCONS_00047730 mRNA downstream 14386 19753890 ~ 19869495 (+) False XLOC_024052
TCONS_00047731 mRNA downstream 14431 19753935 ~ 19865109 (+) True XLOC_024052
TCONS_00047733 mRNA downstream 131099 19870603 ~ 19936598 (+) False XLOC_024054
TCONS_00047735 mRNA downstream 174107 19913611 ~ 19924012 (+) True XLOC_024054
TCONS_00047707 other upstream 241131 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047695 other upstream 621943 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047675 other upstream 1244745 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 1635890 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047663 other upstream 1855119 17862368 ~ 17878632 (+) False XLOC_024013
TCONS_00047732 other downstream 35055 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047755 other downstream 852979 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 864392 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047785 other downstream 2486298 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047798 other downstream 2847792 22587296 ~ 22594781 (+) False XLOC_024094

Expression Profile

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