RNA id: TCONS_00047727


Basic Information

Item Value
RNA id TCONS_00047727
length 1146
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_024051
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19733704 ~ 19752145 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATAAGTCTGTCTTCTTGTGCTTTTAGAGAGTCTAAAGCCTACAAGTTTATTCAGCAGTTCAGCTGGCAAGGACAACACAGCCGAACTATTTAAAGAAGTGGTCTAATGGTAAAATACCCGTGTGATGTGGTGAAAAACTGGCATTTCTACATCTTCGCTTACTGTAAAGTGGATGAACATCATCTGTGAGAAGAGTTGAATCATGATTTACGTTCGAAGAGAAAAGTTGAAATTCATTTTGATGGTGGCTGCTTTCATGATATCCATGGGCCTTGTCCTCAAACTCCTGCAAATTAATCCAGAAGTTACATTATCAAATTTAATAGAAAGGTCAGTGGATGAAATGCATTTAGTCCCGTCGAAACCTGATGTTGGTAAAAAGATGATGGAAATCAAACCTAATGTGCCTAAAGCCAAATGTGGCCTGGCCAAACCATGTCCTGCAGGTGGTTTGGCCTTTAAGATGTACAGCGGTGCAACTAATATAGTTGGACCCCAAATATGCTTTGATGGAAAAATGTTAATACAGAAAGAGACACGAGGTAACTGGCTTGGAATTAATATTGCTGTTATCAATGAAGAAACGGGTGAGCACGTCAAAACTGGCAGCTTCAATATGTGGACTGGAAAGGTTGAAGAGTTAATAGAGTTTCTGAAGTCAATAGAGGATGGTTCTTTTGTGCTGATTACCACTTTTGATGATCCATACACAAAGCTAAATGAGGAAGCAAGGACGCTTCTTGCAGAGCTTGGCAGTGCATTTATATCTAAAATCGGTTTCAGAGATAACTGGATCTTTGTGGGAGGAAAAAACACCTTAGCCCGAGTCTATTTTGAGCAGcacatgaAGAATGACCGGGACACCAATAAGTATGATGGATGGCCAGAAATGATAGAGATGGAAGGTTGCATACCAAGATTACGCTGATTTTCCTACTGCACCAAAGAACAGTTGCTTGTCACTTTTAAATCTGCCACTGGAAGCTATTTTGCCATCTTTGGGTATCATTTCCCCCAACCCCAATGATGTAATTAAAAACATGCGTGTGCATTGGTTTGGATACCAATATATGGGAATATGTACTGAGAAACTTGTACTTGAGTGTGAGACGcttttgatataaaaataaaaaattcatcata

Function

GO:

id name namespace
GO:0045721 negative regulation of gluconeogenesis biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-48 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and regulation of cell adhesion. Predicted to act upstream of or within negative regulation of gluconeogenesis. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000067354

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047713 lncRNA upstream 177762 19552326 ~ 19556276 (+) True XLOC_024044
TCONS_00049225 lncRNA upstream 288526 19443951 ~ 19445512 (+) True XLOC_024041
TCONS_00049224 lncRNA upstream 371951 19356344 ~ 19362087 (+) True XLOC_024040
TCONS_00049223 lncRNA upstream 809647 18920621 ~ 18924391 (+) False XLOC_024031
TCONS_00047734 lncRNA downstream 130906 19870872 ~ 19883530 (+) False XLOC_024054
TCONS_00049226 lncRNA downstream 247102 19987068 ~ 19987387 (+) False XLOC_024057
TCONS_00049039 lncRNA downstream 247113 19987079 ~ 19997540 (+) False XLOC_024057
TCONS_00049040 lncRNA downstream 247113 19987079 ~ 19998226 (+) True XLOC_024057
TCONS_00049229 lncRNA downstream 363299 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00047722 mRNA upstream 2783 19718504 ~ 19731255 (+) False XLOC_024050
TCONS_00047723 mRNA upstream 3287 19720228 ~ 19730751 (+) True XLOC_024050
TCONS_00047720 mRNA upstream 18902 19695652 ~ 19715136 (+) False XLOC_024049
TCONS_00047721 mRNA upstream 19541 19710619 ~ 19714497 (+) True XLOC_024049
TCONS_00047718 mRNA upstream 40137 19680962 ~ 19693901 (+) False XLOC_024048
TCONS_00047730 mRNA downstream 13924 19753890 ~ 19869495 (+) False XLOC_024052
TCONS_00047731 mRNA downstream 13969 19753935 ~ 19865109 (+) True XLOC_024052
TCONS_00047733 mRNA downstream 130637 19870603 ~ 19936598 (+) False XLOC_024054
TCONS_00047735 mRNA downstream 173645 19913611 ~ 19924012 (+) True XLOC_024054
TCONS_00047736 mRNA downstream 207130 19947096 ~ 19951331 (+) False XLOC_024055
TCONS_00047707 other upstream 241418 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047695 other upstream 622230 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047675 other upstream 1245032 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 1636177 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047663 other upstream 1855406 17862368 ~ 17878632 (+) False XLOC_024013
TCONS_00047732 other downstream 34593 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047755 other downstream 852517 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 863930 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047785 other downstream 2485836 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047798 other downstream 2847330 22587296 ~ 22594781 (+) False XLOC_024094

Expression Profile

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