RNA id: XM_036951634.1


Basic Information

Item Value
RNA id XM_036951634.1
length 3000
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110528836
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8475052 ~ 8479361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTTGACCACGCCTATAGTTAGTTGGTGATTGGCATAAATGGTCATGTAGTTTTACAGCCTGCTGAAATGGTAGCCTATGGATGCTAAGCTAGCTAGGTAGCCTGCTAAGTAACTAGTCTCTCCTCACTGTCCCTGTGCCACTCCTCTGCCGGTGGAGCGCCCGTCTGAGTCCAAAGATTATgacaactagctaacGTACCGTCGCTACTTCGATGGCCCACGGGTGATGCAAATAACGATGCGGCACCACTGGCTGCTCGTCGGGGCTTGCGGCTGGGTGTTGCTCATCCTCGTGTTTGCCAACAAGTTTATCAATTTTAACGCCAGAACCACGGATGACTATGGGGAGAAGACTGAGATGCAGAGTTGGACTCAACCAGGAGTTAAGACCATCAAATCACTGCCAGCTCAGAAATCAGACAGAAGAGCTCCCAAGTCATCGAACCTGtcctcAGTAGGCCCCTCCATGGCCAACCCAACAGACTGGAACACTGTGGAGACGAGGCGTCGGGAGCTGCTGTCAGCCGTGTGTAAGAACGACTCCCTCAAGAACCTCACTCACACCTCAATCAACAAGTTTGTCTTGGACCGCATCTTTGTGTGCGACAAGCACAAGATCCTCTTCTGCCAGACCCCCAAAGTGGGCAACACTCAATGGAAGAAGGTCCTCATCGTTCTCAATGGAGAGTTCTCCACTGTGGAGGAGATCCCAGAGAACCTGGTTCATGACCATGAGAAGAACGGACTGCCCCGCCTCTCCTCTCTGACGGAGAAAGAAATCACTAAAAGGTTAGCCACATACTTCAAGTTCTTCATCGTCAGAGACCCGTTCGAGCGCCTCATCTCCGCCTTCAAGGACAAGTTTGTGAAGAACCCGCGCTTCGAGCCCTGGTACAAGCACGACATCGCTCCCGCCATCATCCGTAAGTACCGTAAGAGTCACCGTGACGACGACGACAACCAGGCGACTACGGGCCTGCGCTTCGAGGACTTCATCCGTTACCTGGGCGACGAGCCCGGGCGGCGCCGCATGGACCGTCAGTTTGGGGAGCATGTTATCCACTGGGTGACTTACGCGGAACTCTGCGCCCCCTGTGACATCACGTACAGCGTCGTGGGGCACCACGAAACTCTAGAACGCGATGCCCCCTACATCCTGAAAGCTGCCGGGATCGAGCGTCTGGTATCGTACCCCACCATCCCCCCAGGGATCACCCGTTACAACCGGACCAAGGTGGAGCGCTACTTCTCAGGCATCAGCAAGCGGGACGTCAGGCGGCTTTACGGCCGGTACCAAGGAGACTTCAGCCTCTTCGGCTACCCGAGCCCGGACTTCCTGCTAAACTGAATGACGACGACACTAAAGAAAGACTGTTTTGCAACaataatatgtctctctaatctAACATGCATCTTAATCAGTGTGTGGTTTACTGCAGAGGTAGGGAGGGTGTAGCTAGCTAGCCGCCTAGCCTGGCTGCTCTAACTAGGAGCCATAGTAGAGACTAGTGATCCTCACCATCCGGGTTCAAgccagggagggatggagactaCAGGTTGGTCTGATATAACGTGCTGATCTGCTGTAGGATGATCGTCACTCCTCTACCTGGCTGACAGTAATTCCTGTCTCGACCTAGCAACACTTCCTGCCTCTGCCTAGCAACTGTCACCATGGGCGATGACTGTACTACATGCCTCTACTTCCTGGTAGCCGTCACCATGGTGGCCATGAATGGCATGAGGACCAAGTTGATGGAGAGTTACTCACTATGGTCATGGTTAATGGCTATATTCGCCATACGACCAATTAATTAAGTGCCACATTTCAATGTTATTTAACAAAGCTTTTTGTATTATAATAACTTTATTTAAACCAGAGATTACTGTTACATACTGTGCTAAATTGTACCACCCTCTGCACTACTTCCACACAAAGCAGGTCTGCATTATGGACGAACACTGAAGTGGGTCTGGGACACagtagcctggttaaaccagactgaatgctGAGCACACCATTGAAACGTAGCAGAATCAGTTTGAATGCGAGGTTATAGAGATGGTAGTGAAACACTAACCAGTTAACAATATCAGAGTCCCAGCTCTCTTCCCTCCAGTCTAACCGCTCATACAGAGTAGAGCAACTCCATCTAGCTTCAAGACTCGGCACCTATATAAATGGTGTGATTCTGTGACCTCAGGGTTGACAAGCGCTGAGTGGGAGGAGTCAGTGTCTGCAATGCCTGTGTTCAGGTGACAGGGGGAAGGTTCACTGGCGTAACTCCTGCTGATTGGCTGAAGCTACTACAGTGGATAATACTATGCCTGTATTATGTCATGGGGTGTACAGTCCCTGGGTCTTACCTCATGTTCCCGTCCagtacagtagacagacagatatatagatGTCCTTCAGGGTTAATCCAGTTAAATTCAGCCCAGACACATAATATGGGATCATGGCAATATGGATTGGAGGCATACAGCCAACCCTGTTCTATTCCAATACTTATGTCAAAGAAGGTGGATGAAGGAAGATGTCTTACTCAGGCTGTTTACGTTCTACTTATTAAGGGGTGGCTCTCCCGTAGACACCATTGCTATAGCAGCTGTGTCTGGTCTACTTAGTTCCTTGACTGTATATAAACCATAAAGTGAGGGAGTGGGATGCCTCGCTTCCTCTTCCGTCTCAGTTTGCCACCTGTAAGGGCAGTACATTAGACTACATTGGCACTGTACCTGGGAGAAGGGAAAAATGGTTTCACTTTCTCATCCTCAGAACTGTTATTTCACAATTGAATTCCATGAATTGTCTTATTCTTCATCCTAAACACGACGCCGTCCAATGGCGTCCATGAAGAGAAGTGAGTGACAGTTTCCTGTTGACCTTTTTTAATCAACCAATGTTTGGTATGGACAGTCACATGGTATTGACAGAGCTAGGTGGACAGGCGGTGGTTACTGAATAATAAAGGTTTCATGTCAAATATAAAA

Function

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K09674 CHST10; carbohydrate 3-sulfotransferase 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732868 lncRNA upstream 730 8474388 ~ 8474727 (+) True G1514241
TU1732867 lncRNA upstream 1667 8473241 ~ 8473790 (+) True G1514240
TU1732850 lncRNA upstream 17399 8457734 ~ 8458058 (+) True G1514227
TU1732831 lncRNA upstream 73289 8401202 ~ 8402168 (+) True G1514208
TU1732828 lncRNA upstream 77996 8397196 ~ 8397461 (+) True G1514205
TU1732883 lncRNA downstream 3369 8482730 ~ 8484157 (+) False G1514244
TU1732884 lncRNA downstream 3369 8482730 ~ 8483521 (+) True G1514244
TU1732888 lncRNA downstream 14164 8493525 ~ 8493895 (+) True G1514248
TU1732865 lncRNA downstream 15161 8494522 ~ 8494818 (+) True G1514238
TU1732893 lncRNA downstream 23149 8502510 ~ 8503077 (+) True G1514250
XM_036951619.1 mRNA upstream 2785 8469409 ~ 8472672 (+) True LOC118941085
XM_036951618.1 mRNA upstream 3431 8469399 ~ 8472026 (+) False LOC118941085
XR_005037365.1 mRNA upstream 512377 7962583 ~ 7963080 (+) False LOC118941084
XM_036951398.1 mRNA upstream 528647 7891187 ~ 7946810 (+) True spag17
XM_036951593.1 mRNA upstream 586753 7801623 ~ 7888704 (+) False LOC110516423
XM_036951636.1 mRNA downstream 18991 8498352 ~ 8506254 (+) False LOC110528849
XM_036951635.1 mRNA downstream 26778 8506139 ~ 8511196 (+) False LOC118936321
XM_036951643.1 mRNA downstream 144890 8624251 ~ 8676626 (+) False LOC110495394
XM_036951641.1 mRNA downstream 144933 8624294 ~ 8676626 (+) False LOC110495394
XM_036951653.1 mRNA downstream 145604 8624965 ~ 8674672 (+) False LOC110495394
TU1732800 other upstream 62658 8347227 ~ 8412799 (+) True G1514180
TU1732572 other upstream 460427 8013860 ~ 8015030 (+) True G1514045
TU1732457 other upstream 674399 7794270 ~ 7801058 (+) True LOC110511355
TU1732464 other upstream 714486 7758748 ~ 7760971 (+) False LOC110511355
TU1732416 other upstream 853516 7620296 ~ 7621941 (+) True G1513922
TU1732862 other downstream 19189 8498550 ~ 8504336 (+) True LOC110528849
TU1732918 other downstream 97132 8576493 ~ 8576825 (+) True G1514274
TU1732723 other downstream 194968 8674329 ~ 8676511 (+) False LOC110495394
TU1732736 other downstream 194968 8674329 ~ 8676511 (+) False LOC110495394
TU1732741 other downstream 194968 8674329 ~ 8676511 (+) True LOC110495394

Expression Profile