RNA id: TCONS_00047734


Basic Information

Item Value
RNA id TCONS_00047734
length 607
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_024054
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19870603 ~ 19936598 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACAACGAAGTGAAACCGACTAATGATGGTTTGCAGTTTGCACGCGGGTTTTCGTGCGTAATAACGCTGGAAATTACATCTGACAGCTCAGAGGGTCGCATTGGTGGATCAATGTATCTACTCAAGCATTTTACGCTGGATTTCTCCTCAAGCTGGTagcaggtggtggtggtggtagtggCGTCGGCGACGGAGGAGCTCGGATATTGATGCCTTCCTGTTCATGAAACTTAATTACGAATTACGTGCTAGGGTTGCCACCCGCCATGTTAAGATAAAGACACAGATCTCTGTGCTGAACATGCTAAAGCGATTGGATAAGATAAGGTTCAGAGGACAGAAGCGAGATGAGTTCCTGGACCTTGCCGAATCCCCCAACGCATCTGACAGCGAATGTAACGATGACATCCCAGTAAAACACCGGAGCTCCCTCAAAGATACAGAAGAGCAGCGAGACCCTGTAAGTGAGGTTTTCTTCGTCTGTGAGATTATCAAGGGAGAATCCGTCAGGATCTGCTGAATGCATCTTTTTCTATGTGGTTAAATGTTGTTTTGACTCTGTAGAAAAATTTAAGTTGCTTTAAAATGGCACTGACCTTCATTTTA

Function

GO:

id name namespace
GO:0034164 negative regulation of toll-like receptor 9 signaling pathway biological_process
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4780 Predicted to be involved in negative regulation of toll-like receptor 9 signaling pathway and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD4 (GRAM domain containing 4).

Ensembl:

ensembl_id ENSDART00000156232

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047728 lncRNA upstream 130907 19734160 ~ 19739965 (+) False XLOC_024051
TCONS_00047713 lncRNA upstream 314596 19552326 ~ 19556276 (+) True XLOC_024044
TCONS_00049225 lncRNA upstream 425360 19443951 ~ 19445512 (+) True XLOC_024041
TCONS_00049224 lncRNA upstream 508785 19356344 ~ 19362087 (+) True XLOC_024040
TCONS_00049223 lncRNA upstream 946481 18920621 ~ 18924391 (+) False XLOC_024031
TCONS_00049226 lncRNA downstream 103538 19987068 ~ 19987387 (+) False XLOC_024057
TCONS_00049039 lncRNA downstream 103549 19987079 ~ 19997540 (+) False XLOC_024057
TCONS_00049040 lncRNA downstream 103549 19987079 ~ 19998226 (+) True XLOC_024057
TCONS_00049229 lncRNA downstream 219735 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00049228 lncRNA downstream 219735 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00047730 mRNA upstream 1377 19753890 ~ 19869495 (+) False XLOC_024052
TCONS_00047731 mRNA upstream 5763 19753935 ~ 19865109 (+) True XLOC_024052
TCONS_00047729 mRNA upstream 118727 19739665 ~ 19752145 (+) True XLOC_024051
TCONS_00047727 mRNA upstream 130906 19734038 ~ 19739966 (+) False XLOC_024051
TCONS_00047726 mRNA upstream 131368 19733751 ~ 19739504 (+) False XLOC_024051
TCONS_00047735 mRNA downstream 30081 19913611 ~ 19924012 (+) True XLOC_024054
TCONS_00047736 mRNA downstream 63566 19947096 ~ 19951331 (+) False XLOC_024055
TCONS_00047737 mRNA downstream 63768 19947298 ~ 19948767 (+) True XLOC_024055
TCONS_00047738 mRNA downstream 71046 19954576 ~ 19958278 (+) False XLOC_024056
TCONS_00047739 mRNA downstream 72068 19955598 ~ 19957076 (+) True XLOC_024056
TCONS_00047732 other upstream 96197 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047707 other upstream 378252 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047695 other upstream 759064 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047675 other upstream 1381866 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 1773011 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047755 other downstream 708953 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 720366 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047785 other downstream 2342272 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047798 other downstream 2703766 22587296 ~ 22594781 (+) False XLOC_024094
TCONS_00047805 other downstream 2846877 22730407 ~ 22849186 (+) False XLOC_024096

Expression Profile

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