RNA id: XM_036951680.1


Basic Information

Item Value
RNA id XM_036951680.1
length 1857
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110527296
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9023116 ~ 9030662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttaactttgtttgtggcactaagccctataagcttcacggttgttgcTTGGTTTGTTGGAGACATTTAAAACATAAAATATACGCTCACCccgctgcactttggtctactTCCAACGACACCTGTGACGGTCAAGATTCTGATTGTTTCCCAGAGATTAGAGTGGCACGGAACACAGTATGGAGAACTTCACCTGGGAAAAAACTGAAGATGAACTGTTCTGTTGCTTTCTGTTCTAACTCACCAACACCATCATGGTGTAAGTTTGATGAATCAAACATATGCCTAACTGTCAACACAACAACTCTCATTCAAACACAGTTGACAAATTTGACAAACACTACATGGATCTCATTTCTGACTTTCAAAAGCATATCCAGAGGTGATGCTGGTCTATACAGGTGTGAATTACACACGGCTGTGGGTCATTCTATCAATGTTATCGTCTCAGAGAGAATTGAAGACACCACAGATTTATATCAGAACAATGAAACAAACAGTACAGCGAGTCAGAGTGACAGCTTCCGGGAGTGGGTGTGGCCTTATGTTTACTCCTCGGCTGGGATTGTGGTGTTTGTCATCGTGGTGATAACCATATCCATGCTCTCATTGCGTGGTTGTAAAAGTGCCTGTCCGGCCAGGAAGTCAAGGAAAGAGGACCAAACAGAGAACCAGTATATGGCTATACCAATGACCCAGCAAGCATTCCCACGACCCAACCCACAATCCCACCACAGAGGAAGCATCCGATCCCACCAATCCCAGGACCGGCTCCAAGCCCAGCCCACCCCACCGCCGGACTGTATCTATGACAACGCACCTGCCAGGGGCCCACGTCGCACCCATCCGGCACCCGGCCAAGCTGCAGCCAATCAGGTAGCTGTCCCGGTGGACACGGACAATACCTATAGCAacgggaaggagaaagaggaagagagtgatATCATGTACGCAGCGCTAAACCATCAGGTAAAGCCTCGGGCCGCTGCGCGCCCTGCACAGCCTCGGATAGAGGGCTCAGAGTACGCAGCCATACGAGTGTCCTGAGCCCTGGAACCAGGAAGTAAAACTCCTCTTCCCAGAGGGCCACAGTCCGACTGGTCTTTGTTTCTCCCTGATTACGAGAAGGGGGTCGCTGCGTCCCAAAATGGCGACCGGAGTATGGGcgagtgggtgtgtcaaaaggGAAGTAGTGGGTGTGTAGAAAGGAATGGGTGTGTCAAATCGTCTGCTATAGGTTAGACGGTTTTGATTGAGCTGTGTTTTTTTCTCTTCCGTTTCTTGCCACTCAACCAGACTGTGACACACAACTAGGTGCTATCatcaaccaaaaagggttatttggctgtcctcataagagaaccctttaaagaaccccctttgtttccaggtagaacccttctgggttccatgaagaaccctttccacagaggggtctgCATGGaatccaaaagagttctacctagaaccaaaaagggtactcctatggggacagccgtaaaacccttttggaaccctttttgtGTACCTCACATTGAGCTACCATACTGCGAGAGTTGGGACATCTGTTTTTAAGCCAGAGGATGAGTCTGAGTGTTAGAATTACATGAATAATTGTACATTTTCCGGTTTAAAACTGAAGATTGTTCATTGGGGCGGCAGCTAGCCttgcattgggtcagtaaccgaaaggttgctagatcaaatcccagagctgacaaggtcaaaatctgttgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgtaaataagaatgcgttcttaactgacttgcctagttaaataaatattaaatacattttttaaagtattgAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1733899 lncRNA upstream 21696 9003208 ~ 9004114 (+) True G1515006
TU1733889 lncRNA upstream 35026 8989653 ~ 8990784 (+) True G1514998
TU1733883 lncRNA upstream 38212 8985234 ~ 8987598 (+) False G1514996
TU1733961 lncRNA downstream 50118 9080780 ~ 9081368 (+) True G1515044
TU1733983 lncRNA downstream 67061 9097723 ~ 9116851 (+) True G1515058
TU1734001 lncRNA downstream 108326 9138988 ~ 9140844 (+) True G1515076
TU1734019 lncRNA downstream 138314 9168976 ~ 9196410 (+) True G1515093
TU1734026 lncRNA downstream 146988 9177650 ~ 9178516 (+) True G1515098
XM_036951401.1 mRNA upstream 57024 8950376 ~ 8968786 (+) True LOC110496974
XM_036951673.1 mRNA upstream 75618 8948861 ~ 8950192 (+) True LOC110496912
XM_036951672.1 mRNA upstream 78173 8935195 ~ 8947637 (+) True hsf2bp
XM_036951671.1 mRNA upstream 91929 8928933 ~ 8933881 (+) True LOC110495382
XM_036951400.1 mRNA upstream 173366 8847990 ~ 8852444 (+) True LOC118941058
XM_036951693.1 mRNA downstream 64233 9094895 ~ 9100486 (+) True LOC118941086
LOC118941059 mRNA downstream 77574 9108236 ~ 9111483 (+) True LOC118941059
XM_036951402.1 mRNA downstream 84956 9115618 ~ 9128658 (+) True LOC110523347
XM_036951694.1 mRNA downstream 103900 9134562 ~ 9160007 (+) True LOC100653484
XM_036951705.1 mRNA downstream 216165 9246827 ~ 9255405 (+) False LOC110497024
TU1733898 other upstream 22684 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 345600 8678448 ~ 8680210 (+) True LOC110495395
TU1732723 other upstream 349299 8674329 ~ 8676511 (+) False LOC110495394
TU1734946 other downstream 943866 9974528 ~ 9975306 (+) True G1515776
TU1735043 other downstream 1139440 10170102 ~ 10171956 (+) True G1515853
TU1735389 other downstream 1288648 10319310 ~ 10327138 (+) True G1516136
TU1735992 other downstream 1986103 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 2055423 11086085 ~ 11092554 (+) True LOC118941092

Expression Profile