RNA id: TU1734207



Basic Information


Item Value
RNA id TU1734207
length 770
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC110496958
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9138106 ~ 9153834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCGTGGACCATTCTTCAGAATAACGAAAGCGTTAGAACTGTGCTGTCAAGACGATAACCGTTGTATGTATTACTACAGTCCGAGGCcagtaacatcaacagtgaggacaaacccagcctgcctctctcctttcACACTGAGTCCAAACgtacagtcactgggtcctgattgtgacagttgagcccagtttgcactgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacactagagctgaatgtcaacattaaagatgaagaagaggaggagaagattgggAAATCTGTTAGTCATGGTGACGTTGAGACATTCTCTACATCCAGAAAGCAGCAGGAAGATCACAGAGCTAAGAGGTCTCACCACTGCCCACATTGTGAGGAGATTTTCCCAATGCTATCAAAGCTAAAAATACACctaaaaatacacacaggagagaatctGTATTCCTgcactgactgtgggaagagcttcacaACATCAAGGGCTCTGACAGTTCATCAGAGATGGCACACGGGATTGAAGTCTTTCCCCTGCTccgactgtggaaagagtttcacaACATCAAGGGCTCTGACAGTTCATCAGAGagtgcacacaggagagaagccttactcctgctccgACTGTGAAAAGAGTTTCTCCCGATTGGATAAGTTAAATAGGCACCAActaatacacacaggagaaaagtcttacttctgctctgactgtgggaattGTTTCGCCCAATTTAATACCTTAAAATCTCACCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1734206 lncRNA downstream 996 9138611 ~ 9139550 (-) False LOC110496958
TU1734197 lncRNA downstream 24161 9115593 ~ 9116385 (-) True G1515212
TU1734181 lncRNA downstream 29691 9109362 ~ 9110855 (-) True G1515202
TU1734186 lncRNA downstream 32220 9106831 ~ 9108326 (-) True G1515206
TU1734127 lncRNA downstream 125090 9013815 ~ 9015456 (-) True G1515163
TU1734234 lncRNA upstream 22539 9176331 ~ 9178545 (-) True G1515245
TU1734259 lncRNA upstream 88532 9242324 ~ 9242750 (-) True G1515260
TU1734260 lncRNA upstream 89220 9243012 ~ 9243308 (-) True G1515261
TU1734374 lncRNA upstream 94054 9247846 ~ 9254659 (-) False G1515354
TU1734372 lncRNA upstream 99772 9253564 ~ 9254659 (-) True G1515354
LOC110525718 mRNA downstream 45231 9080729 ~ 9095315 (-) True LOC110525718
XM_036951687.1 mRNA downstream 59937 9046063 ~ 9080609 (-) True LOC110495466
XM_036951686.1 mRNA downstream 59938 9046063 ~ 9080608 (-) False LOC110495466
XM_036951688.1 mRNA downstream 59938 9046063 ~ 9080608 (-) False LOC110495466
XM_036951684.1 mRNA downstream 119926 9007457 ~ 9020620 (-) True LOC110527295
XM_021570745.2 mRNA upstream 6871 9160663 ~ 9173147 (-) True LOC110495469
XM_036951692.1 mRNA upstream 52319 9206111 ~ 9212464 (-) True LOC110525276
XM_036951695.1 mRNA upstream 60707 9214499 ~ 9218940 (-) True LOC110525040
XM_036951697.1 mRNA upstream 66067 9219859 ~ 9224041 (-) False LOC110517156
XM_036951696.1 mRNA upstream 66070 9219862 ~ 9224041 (-) True LOC110517156
TU1734113 other downstream 134770 8997659 ~ 9005776 (-) False LOC110496973
TU1734072 other downstream 212946 8923658 ~ 8927600 (-) True LOC110496975
TU1733612 other downstream 537594 8591748 ~ 8602952 (-) True LOC110528847
TU1733548 other downstream 642318 8495634 ~ 8498228 (-) False LOC110515325
TU1734456 other upstream 238904 9392696 ~ 9393608 (-) True LOC118941087
TU1734435 other upstream 268777 9422569 ~ 9423581 (-) True LOC110495568
TU1734538 other upstream 324884 9478676 ~ 9479218 (-) True G1515456
TU1734564 other upstream 334778 9488570 ~ 9493882 (-) True LOC110495556
TU1735073 other upstream 607681 9761473 ~ 9765225 (-) True G1515880

Expression Profile