RNA id: XM_036951706.1


Basic Information

Item Value
RNA id XM_036951706.1
length 1747
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC110497024
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9246827 ~ 9255405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAACATTAATGCAGGTAAGCGCCATAAATTATGATTTTGCAGTCGGTTTATTAAGCGGTGTAGCTAGCTCAGAGCGGTCTGATTCAACTTTTAGAAGCTGCGTTTGCTGTGTCTAAGTCACTGATCATGAAAAGTTCAAAGGAAGCTGTGCAGACTGCTGCCAAGGAATTCCTGCAGTTCGTGAACAAAGGAGTGTCTCCATACCACGTGGTTGAGGAGTGTAAGTCTCGTCTGCTGGGGGCTGGCTTTACTGAGCTGAAGGAGACTGAGCAGTGGAACATCAAGCCTGCCAGTAAGTACTTTGTGACCCGTAACTACTCCTCCATCATCGCTTTTGCTGTGGGTGGACATTTCCAGCCAGGCAATGGCTTCACTATGATTGGAGCGCACACAGACAGCCCCTGTCTGAGGATTAAGCCACGGTCCAAGAAGACCAAACAGGGCTGTCTGCAGGTCGGGGTGGAGTGCTACGGAGGAGGAATCTGGAACACCTGGTTTGACCGGGATCTGACCATCGCCGGTCGTGTTATGGTCAAGACTGGAGACAAGCTGGTCCATCGTCTGGTTCACGTGCCCCGGCCGATCATGAGGATCCCCCACCTGGCCATCCACCTCCAGAGGGACATCAACGACTCCTTCGGCCCCAACAAGGAGAACCACCTtgtgccCATCCTAGCCACTGCTGTACAGGAGGAGTTGGAGACTGGCTGCTGTTCCACTGGGGATGCCTGCGATGCCACCACTTTTGCAGAGAAGCACCACCCGGCCCTGGTCAAGGTGCTGTGTTCAGAGCTGGACGTTCAGCCTGAGGCCCTGCTGGACTTTGAGCTGTGTCTGGCTGACACTCAGCCAGGGGCAATTGGTGGTGTGTTTGAAGAGTTCATCTACTCCCCCCGTCTGGACAACCTCCACAGCTGCTACTGTGCCCTGCAGGCTCTGATGGACTCCTGCATCTCTGGAGACTCTTTGGCCACAGACCCCAACATCAGGATGGTGACTCTGTTTGACAATGAAGAGGTGGGGTCAGAGAGCGCCCAGGGGGCagcgtccaacctgacagagctgatcCTGAGTCGACTGTCCTCCTCCCCCACCAACCTCACAGCCTTCCAGCAGGCGGTGCCACGCTCCTTCATGATCAGCGCCGACATGGCCCACGCCCTGCACCCCAACTACCAGGAGAAGCATGATGAAAACCACAGACCAGCCTTCCACAAGggtcctGTAGTTAAATTCAACAGTAACCAGCGCTATGCCACTACGGCTGTGACAGCCTCCATCTTGAGAGAGATCGCCAGTCGTGTTGGTGTGCCTCTTCAGGATGTGATGGTGCGTAACGACAGCCCCTGTGGGACCACCATCGGCCCCATCCTGTCTTCCCGCCTGGGGATCCCCGTGCTGGACATCGGTGCCCCCCAGCTGGCCATGCACTCCATCAGGGAGATGTGCTGCACCTCCGGGGTGCTCCAGTCTACCAACCTATTCAAGGGCTTCTTTGAGCTCTTCCCCACTGTGAGAGACATGGTGACTGTGGACTAGCCTGGGGGAAGGACACAGCAtggacagaaggacagacagatgTCCTCCTCTGGGTCTCTCTACACACGGTGTTATTTGTATACTCACATGACACACAGTGCTACAGCAGAACGTTTTGCACACATTCAGAGGCAAGGAAAGTTTCCTTCAAATTATGTTTCTGATGAACTGAAATGGtttataaaataatacatttttaatctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1734042 lncRNA upstream 17798 9212576 ~ 9229128 (+) False G1515109
TU1734041 lncRNA upstream 17798 9223381 ~ 9229128 (+) True G1515109
TU1734049 lncRNA upstream 23190 9218261 ~ 9223736 (+) True G1515110
TU1734019 lncRNA upstream 50516 9168976 ~ 9196410 (+) True G1515093
TU1734270 lncRNA downstream 46321 9301726 ~ 9311147 (+) False G1515266
TU1734278 lncRNA downstream 46321 9301726 ~ 9308928 (+) False G1515266
TU1734282 lncRNA downstream 46321 9301726 ~ 9308928 (+) False G1515266
TU1734275 lncRNA downstream 50805 9306210 ~ 9311147 (+) True G1515266
TU1734287 lncRNA downstream 58058 9313463 ~ 9315447 (+) True G1515270
XM_036951694.1 mRNA upstream 86919 9134562 ~ 9160007 (+) True LOC100653484
XM_036951402.1 mRNA upstream 118268 9115618 ~ 9128658 (+) True LOC110523347
LOC118941059 mRNA upstream 135443 9108236 ~ 9111483 (+) True LOC118941059
XM_036951693.1 mRNA upstream 146440 9094895 ~ 9100486 (+) True LOC118941086
XM_036951680.1 mRNA upstream 216264 9025810 ~ 9030662 (+) True LOC110527296
XM_036951708.1 mRNA downstream 1169 9256574 ~ 9299643 (+) True LOC110495547
XM_036951734.1 mRNA downstream 246103 9501508 ~ 9546957 (+) False LOC110495570
XM_036951731.1 mRNA downstream 246103 9501508 ~ 9550995 (+) False LOC110495570
XM_036951732.1 mRNA downstream 246103 9501508 ~ 9550995 (+) False LOC110495570
XM_036951733.1 mRNA downstream 246103 9501508 ~ 9550995 (+) True LOC110495570
TU1733898 other upstream 243800 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 566716 8678448 ~ 8680210 (+) True LOC110495395
TU1732723 other upstream 570415 8674329 ~ 8676511 (+) False LOC110495394
TU1734946 other downstream 719123 9974528 ~ 9975306 (+) True G1515776
TU1735043 other downstream 914697 10170102 ~ 10171956 (+) True G1515853
TU1735389 other downstream 1063905 10319310 ~ 10327138 (+) True G1516136
TU1735992 other downstream 1761360 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 1830680 11086085 ~ 11092554 (+) True LOC118941092

Expression Profile