RNA id: TCONS_00049039


Basic Information

Item Value
RNA id TCONS_00049039
length 698
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_024057
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 19987068 ~ 19998226 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCTCTAACCCTAACGCTTCTTTGCTTCCTGTACGGCTTGTATGCTGTTTTGTCTTAAGCTTTCAGCATATTACATGAAGCTTTCCGCGGTTTCGATACTTTAAAAAAGCTATAGAGTACTCTGGCGCTCGGTCTCACAGGTTTGGCTGTTTGTACGCGGACAGTTTGACTGCCGCCAAGAGTTCGGCTCTGCTGCACATTCGGCAGGTCTGTGGACTGCACAACACTGAGCAGATTAACTTGAGCATGGCGAAaaaaaaaaaaaaaaaaaaaaattttatgaaaTTTTAAGATGGGGAAATATGCATTTTGATTGGTTTTTAACATGCTATCAGATTTGATTTATCTGAATTTGATTATGTATTATGTATGTTCACATTTTATCAGTAAATCATtagtaaattatttttgtttaattcttGGGTGAAGCATCATTTTAAAGTCTTGTATAATGTacatattaaactttttttttttttcatttattcaactaTAAACTTCAAGTAGCTAATTGTTCACAAATTATATGCATTTTTGCAAAAATAGTGAGGGCTAGCGAAGCACACAAGTCTACTTGAACTCTGAGCATTTATGTACACAAATAGACCCTTGGGCATTTTCTAAAAACATTGGAAGCATCAAAAGTATAGTATTAAAATTGAAACATCCTAATTGTAGAAACGTCTTAATGTTAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047734 lncRNA upstream 103549 19870872 ~ 19883530 (+) False XLOC_024054
TCONS_00047728 lncRNA upstream 247114 19734160 ~ 19739965 (+) False XLOC_024051
TCONS_00047713 lncRNA upstream 430803 19552326 ~ 19556276 (+) True XLOC_024044
TCONS_00049225 lncRNA upstream 541567 19443951 ~ 19445512 (+) True XLOC_024041
TCONS_00049224 lncRNA upstream 624992 19356344 ~ 19362087 (+) True XLOC_024040
TCONS_00049229 lncRNA downstream 105725 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00049228 lncRNA downstream 105725 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00049227 lncRNA downstream 105725 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00049230 lncRNA downstream 105784 20103324 ~ 20109429 (+) True XLOC_024061
TCONS_00047760 lncRNA downstream 718686 20716226 ~ 20716965 (+) True XLOC_024069
TCONS_00047738 mRNA upstream 28801 19954576 ~ 19958278 (+) False XLOC_024056
TCONS_00047739 mRNA upstream 30003 19955598 ~ 19957076 (+) True XLOC_024056
TCONS_00047736 mRNA upstream 35748 19947096 ~ 19951331 (+) False XLOC_024055
TCONS_00047737 mRNA upstream 38312 19947298 ~ 19948767 (+) True XLOC_024055
TCONS_00047733 mRNA upstream 50481 19870603 ~ 19936598 (+) False XLOC_024054
TCONS_00047740 mRNA downstream 2083 19999623 ~ 20003528 (+) True XLOC_024058
TCONS_00047741 mRNA downstream 79685 20077225 ~ 20087924 (+) False XLOC_024059
TCONS_00047742 mRNA downstream 84013 20081553 ~ 20087530 (+) True XLOC_024059
TCONS_00047743 mRNA downstream 92446 20089986 ~ 20096853 (+) False XLOC_024060
TCONS_00047744 mRNA downstream 92534 20090074 ~ 20096491 (+) False XLOC_024060
TCONS_00047732 other upstream 212404 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047707 other upstream 494459 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047695 other upstream 875271 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047675 other upstream 1498073 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 1889218 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047755 other downstream 594943 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 606356 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047785 other downstream 2228262 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047798 other downstream 2589756 22587296 ~ 22594781 (+) False XLOC_024094
TCONS_00047805 other downstream 2732867 22730407 ~ 22849186 (+) False XLOC_024096

Expression Profile

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