RNA id: XM_036951743.1


Basic Information

Item Value
RNA id XM_036951743.1
length 1854
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110497029
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9520263 ~ 9525979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCCATCTGAGACACAGGAAGAAACAGACATGTTGACTGGACCGACACTGGGCTCTGATACATTTATACATGACTTGAACACAAACAGCTAGTTTTCCTTTACCAAAACAAAATTAGTTGTCAAATAAACTAAACTAAGCCAAGCAGAGAAAGTGCAACAGTTAAGTTCTGTCCAGAACAGGGAGGTGTTGAGAGATACCTTTTTGCTAAAGTGAAAGTACAACTGCATAACTCTCCCCTCTTGACAGAAGGTGGACTGTGTAGAGCAACGAGGAGCAGGAAACACACCCAGAAATGTCCACCTCCAGCAATGTCCTGTCTGAAGAGCAGTTCctgtgctctgtctgtctggatgtgttCACTGAGCCAGTCTCTATTCCATGTGGACACAACTTCTGCAAGGCCTGTATCAGTGAATACTGGAACAGCAGTGTCCTGTGCCAGTGTCCACTGTGTAAGGACACATTCAATAGAAGACCTGACCTAAAAACCAACACAACACTCAGAGATGTTGCAGATCATTTTAAGAGGATGAAGGTCTCAGACAGAGAGGAGTCCTCTTCCAAGCCTGGAGAAGTAGCACAAGTGCAGCAGATGGTCCAGGAGCGACTGCAGAAGGTTAAGGAGATCAAACTCTCAGTAGAGCTCAgccagagagatgcagagagagagatagcaggaAGTGTGGAGGTCTTCACTGCTCTGGTGCGCTCCATTGAGAGAAGTCAGGCAGAGCTCATTGAGGTggttgaggagaagcagaaagAAGCTCAGAGGCAGGCTGAAGGGCTCATTGAAAAACTGGAGCAGGAAATCAGTGAGCTGCTGAGGAGAGGCACTGAGCTGGACCACCTCCACCAGAACTCCCCATCCCCAATCAAggactggtctgagatcagtgtTCACAGGGATCTGCATGTAGGAACTGTGAGGAGAGCTCTTTCTCAGCTGGAGGAGATGCTTCATAATGAGATGGAGAAGTCGTGTAATGCTGAGCTGAAGATGATACAGCAGTGGTCAGTGAATGTGACTCTGGATCCTGATACAGCACACCCCAAGCTCATTGTTTCTAAGAACAGGAAACAAGTGAGCTATGGAGACATACGGCAGAATATCCCTGACAACCCAAAGAGGTTTGGACGTTATCTATCGGTCCTGGGAAAGAAGGGCTTCTCCTCAGGGAGATTCTACTTTGAGGTTCAGGTTAGAGGGAAGATTGAGTGGGAGGTAGGCGTGGCCAGAGAGTCCATCATCAGGAAGGGCCCAACAGTTAAAAGCCCAGATGCTGGACTCTGGGCTGTGAATATGAAGGGTGAGAATAAGTACGAGATCATGGACACACCCCCTATCCCCCTCTTCCTGAGTCAGAAACCCCAGAAGGTGGGGGTGTTTGTGGATTACGAGGAGGGTCAGATCTCCTTTTATGATGTAGAAAACAGGTCTCATATCTACTCTTTCACTGGTTGTACCTTCACTGAGAAACTATATCCATTCTTGAACCCCTGTAATAATTCTGAGGGTCCAAACACAGCCCCATTGGTCATCTCTCCTGTCAATCACACTGACTGAATTGGTGTCCAATAAGGCAACAGATGACTTAATCTGATTATCCTAATTGTTATTTGCTCAACACATCCAATTGTAAAGAGTGTTGTTAATAATAATGGGGCACGTTCCAGGGGTCTGCCATGCAATCACAAACCAAATTTCACAACACCTGGACAGGTGTTTAACAACATGCCAGAAACCCCATCAATATAAAATCTTATTAGTCacgagccgaatacaacaggtgtagtagaccttacagtgaaatggtaacTTACGAacccataaccaacaatgcagtacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1734577 lncRNA downstream 3610 9515848 ~ 9516653 (-) True G1515476
TU1734560 lncRNA downstream 32026 9486866 ~ 9488237 (-) False LOC110495556
TU1734476 lncRNA downstream 53465 9465970 ~ 9466798 (-) True G1515420
TU1734421 lncRNA downstream 116546 9403188 ~ 9403717 (-) False LOC110495568
TU1734438 lncRNA downstream 135859 9382323 ~ 9384404 (-) True G1515383
TU1734546 lncRNA upstream 12068 9538047 ~ 9539018 (-) True G1515457
TU1734603 lncRNA upstream 45343 9571322 ~ 9571596 (-) True G1515493
TU1734701 lncRNA upstream 99626 9625605 ~ 9626277 (-) True G1515580
TU1734703 lncRNA upstream 110443 9636422 ~ 9636986 (-) True G1515582
TU1734709 lncRNA upstream 124506 9650485 ~ 9650711 (-) True G1515588
XM_036951741.1 mRNA downstream 19023 9486842 ~ 9501240 (-) False LOC110495556
XM_036951744.1 mRNA upstream 191 9526170 ~ 9528303 (-) True LOC110495573
XM_036951735.1 mRNA upstream 25279 9551258 ~ 9570575 (-) True LOC110497032
XM_036951745.1 mRNA upstream 60962 9586941 ~ 9688732 (-) False LOC110496916
XM_036951746.1 mRNA upstream 60962 9586941 ~ 9688733 (-) True LOC110496916
XM_036951755.1 mRNA upstream 241642 9767621 ~ 9785105 (-) False LOC110527257
TU1734564 other downstream 26381 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 41045 9478676 ~ 9479218 (-) True G1515456
TU1734435 other downstream 96682 9422569 ~ 9423581 (-) True LOC110495568
TU1734456 other downstream 126655 9392696 ~ 9393608 (-) True LOC118941087
TU1734207 other downstream 366471 9140546 ~ 9153792 (-) True LOC110496958
TU1735073 other upstream 235494 9761473 ~ 9765225 (-) True G1515880
TU1735278 other upstream 648880 10174859 ~ 10195515 (-) True LOC110516308
TU1735300 other upstream 684339 10210318 ~ 10210833 (-) True G1516062
TU1735349 other upstream 732846 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 1327590 10853569 ~ 10856314 (-) True G1516562

Expression Profile