RNA id: XM_036951735.1


Basic Information

Item Value
RNA id XM_036951735.1
length 3481
RNA type mRNA
GC content 0.56
exon number 14
gene id LOC110497032
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9551258 ~ 9570575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCATATGAGATCACCACTCTCTGACTAACACCCTGGACAGAGTCATACCTCTGTCTTATACCtcatatctctgtgtgtctctgctctgtagctacatatctctctgtgtgtctgctctGTAGCtacatatctctctgtgtgtctttgctCTGTAGCTacatatctctctgtgtctctgctctgtagctacatatctctctgtgtgtcttttttCTGTAGCtacatatctctctgtgtgtctctgctctgtaGCTACATATCTCTCCGTGTGTCTTTGCTCTGTAGCtacatatctctctgtgtgtacagCATTCTTTCTGATTCTACCCATTTCTGTTTTCATCCATCTCTACCTCAACTTTTTCCTCTCAGTTGcctttctctattctctctgtcactctctctcttccgctctctctctttgtaatAGTCTACATTCACCTCTGCTACCTGTGGTCTCACTATGAGTGGTAATCTGTGGACGGAGGAGCAGTTCAACTGTCCTGTGTGCCTGGACCTCCCCAATGAGCCAGTCACCATCCCGTGTGGCCACAGCTACTGCATGGGCTGCATCAAGGACTACTGGAGCAAGGACAACCCTCGCTCCCCTGGAGTCTACAGCTGCCCCCAGTGCCGCCAGACATTCTGTCCCAAGCCCTCCTTGTCCAGGAACACCATGCTGGCAGAGGCCGTGGAGCAGCTCCGCAAGGGGGCCCTCACCACCTCCGCCAGGGAGTCCATCCGGAGCGCCCACCGTGCCAACACCATGGGTAGAGCCAAGGGAAGTTCCCGTAGTGGTGGTGTCAGCAGGCTGCCAGCCATGGCCGTGCCCTGTGACATGTGCCACGGCGCTGGAGACCAGCGGGCTGCGGTGAAGTCTTGCCTGGTGTGTATGGCGTCCTACTGCGAGGCCCACCTGAAACCGCATCAGACGAAAGCGGAGTTGAAAAAGCATGAGCTGATTGCGCCCACGGGCAAGCTGGCGCAGAAGATCTGTACCGAGCACAAGTACCTGCAGGAGTTCTACTGTCGCCAGTGCCAGATTTTTGTGTGCTGGCTGTGCACCAGTAACCAGCACAAGGACCATGAGACCACCTCCACCAAGGCAGAgcgcacagagagacagAAAGAGCTGGCTGAGGTGCAGACAGAGAATCATCAGAGActgaaagaaagagaaggagagctgAAAGACATGAAGAAGATGCTGGAGGCAACAAAGCGCTCAGCAGACAGGGTACATGATGACACAGAGACGGTGCTGTCGGAGCTCCAGCGCTCAGTGGAGAGGCTCCAGGAGCTGGTGGAGGGTGTGATGAACCAGGCTGGGCAGGAGAAAGTAAGCGAGGCCCAGGACGTGGTGGACAAGCTGGAGGCCGAGATCTCGGAgctgaagaggagagacaaggacaTGAAGGAGGTGTTCCGCTGTGAGGACAACATCCACTTCCTGGAGACCTGTGAGTCTCTGTGCAGCCCGTTTGAGTGTAATGATCTGTCGTGTGTGGTGGCCAATCCAGAGGCTACGTTTGAGCCTGTACGTGAAGCCATCCTGAACCTAcgggagagagtggaggacatGTGCAACTTGGAACTGGGCAAGATCACCAAGACAGTGAATGACACAACACTGTTCACCTTAGGAGACAAAGCAAAAAAAAATGGCGTCCAGAAGACGGGAGGGTTCAGGAGTTTGTTTTCTGGTCTGggatccaaaacaacaacaacaaacaacaaccgTCCCGCAGCTCCCACACCGACTGTCTCCGTGGCGGTTCGAGGACCTAACTCACGTGGTGTAGGCCTGCGCTCTCAGGATGTTAGGAGCAGAGAGGAACCACGAgCTGACAGAGACAGgccgaggagagaggagagagaaccagCCAGAGAGGCAGCCCCCAGACCAAGCACCAGATCTAGTCCCACTCAGAGGCGGAAAAAGCCAGCCAGAAATAGCCCTACCCAAAGTCGAAGAGAGACGCGCAGACgcagtcccagtcccactccaaGTCGTAGAGAGCcagccagtcccagtcccactccaaGTCGTAGAGAGCcagccagtcccagtcccactccaaGTCGTAGAGAGCCAGCCAGTCCCAGTTCCACTCCAAGTCGTAGAGAGCcagccagtcccagtcccactccaaGTCGTAGAGAGCCAGCCAGACCCAGCCCTACGCCCAGCCGGAGAGAGACACCCAGACCAGaacccaccaccacccctacccccGGTGCTGTTACCCAAGCCACCCCAGCCTCAGGAGCTTTCAGCCGGATGGGATCCATAGCAAGTCTCTTCCGCTCCCATCGACGTGCCACACCGGCACCTGGGCCAGTCAACAACAACACTGGTGGAGTTGACCCATGGGGGATGGGTGCACTGACTGAATCTCAACCGGAAGTGAATACCAGCCTTTTCCTGGATCCGCCGACCCCTGACCCCATCATGAATCAGATGCCAGCTTTCCCTGCATTGAGGGAGATAGACATCTCCAGCATCCAGGCCCCAGAGCCCAGGAGCAGAGAGGAGTTCCTGCAGTATGCCTGTACCCTGACCCTAGACACGAGAACAGCCCACCGGCGTCTGACCCTGTCGGAGAGCAACACCAAGGCCACCCTACAGGGGGCAGGGCAGCCCTACCCAGACTGCCCCCAACGCTTCGACGGCTGGACCCAGGTGCTGTGCCAGGCCCCTCTTTCCGCCCAGCGATGTTACTGGGAGGTGGATTGGAGGGGGAAGGGGTCATCAATGGGAGTAGCTTATGGAGCCCTGAGCAGGAAGGGGGCGGACGCCAGGGCGGGGCTTGGCTACAACGCCCAATCATGGAGCCTGGAGCTGTCGGATACGTGTTGCACGGCAATGCATGACAATGAGAAGAGGGACATCCCGGTGACGTACTCGCCGCGTCTGGGGTTGTTCCTGGACCTCAACGCGGGCACCCTGGCGTTCTATAGCGTGGCGGAGAGCATGGCGCACCTGCACACGTTCCGTGCCAACTTTACACAGCCACTGTATGCGGCCTTCGGGgtgggaagtggggttggtgttgGACTGGACTTCGCTCTGGGTCAGTTCAGCCAGACATCCGACAGCATCAAGATCTGCCCCATGTGACGAGACCTACGACCTCTGTATAGATCTGCCCCATGTGAGGAGACCTACGACCTCTGTATAGATCTGCCCCGTGTGACGAGACCTACGACCTCTGTATAGATCTGCCCCGTGTGAGGAGACCTATGACCTCTGTATAGATCTGCCCCATGTGATGAGACCTACGACCTCTGTATAGATCTGCCCCATGTGATGAGACCTACGACCTCTGTATAGATCTGCCCCATGTGATGAGACCTACGACCTCTGTATAGATCTGCCCCATGTGATGAGACCTACGACCTCTGTATAGATCTGCCCTGTGTGAGGAGACCTACGACATCTGTATAGATCTGCCCCATGTGACATGACCTACGTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1734553 lncRNA downstream 275 9480326 ~ 9550983 (-) True G1515458
TU1734546 lncRNA downstream 12240 9538047 ~ 9539018 (-) True G1515457
TU1734577 lncRNA downstream 34605 9515848 ~ 9516653 (-) True G1515476
TU1734560 lncRNA downstream 63021 9486866 ~ 9488237 (-) False LOC110495556
TU1734476 lncRNA downstream 84460 9465970 ~ 9466798 (-) True G1515420
TU1734603 lncRNA upstream 747 9571322 ~ 9571596 (-) True G1515493
TU1734701 lncRNA upstream 55030 9625605 ~ 9626277 (-) True G1515580
TU1734703 lncRNA upstream 65847 9636422 ~ 9636986 (-) True G1515582
TU1734709 lncRNA upstream 79910 9650485 ~ 9650711 (-) True G1515588
TU1734717 lncRNA upstream 94748 9665323 ~ 9665530 (-) True G1515592
XM_036951744.1 mRNA downstream 22955 9526170 ~ 9528303 (-) True LOC110495573
XM_021573032.2 mRNA downstream 25279 9520263 ~ 9525979 (-) False LOC110497029
XM_036951743.1 mRNA downstream 25279 9520263 ~ 9525979 (-) True LOC110497029
XM_036951739.1 mRNA downstream 50018 9488550 ~ 9501240 (-) False LOC110495556
XM_036951745.1 mRNA upstream 16366 9586941 ~ 9688732 (-) False LOC110496916
XM_036951746.1 mRNA upstream 16366 9586941 ~ 9688733 (-) True LOC110496916
XM_036951755.1 mRNA upstream 197046 9767621 ~ 9785105 (-) False LOC110527257
XM_036951753.1 mRNA upstream 197046 9767621 ~ 9785106 (-) False LOC110527257
XM_036951752.1 mRNA upstream 197046 9767621 ~ 9785107 (-) False LOC110527257
TU1734564 other downstream 57376 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 72040 9478676 ~ 9479218 (-) True G1515456
TU1734435 other downstream 127677 9422569 ~ 9423581 (-) True LOC110495568
TU1734456 other downstream 157650 9392696 ~ 9393608 (-) True LOC118941087
TU1734207 other downstream 397466 9140546 ~ 9153792 (-) True LOC110496958
TU1735073 other upstream 190898 9761473 ~ 9765225 (-) True G1515880
TU1735278 other upstream 604284 10174859 ~ 10195515 (-) True LOC110516308
TU1735300 other upstream 639743 10210318 ~ 10210833 (-) True G1516062
TU1735349 other upstream 688250 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 1282994 10853569 ~ 10856314 (-) True G1516562

Expression Profile