RNA id: XM_036951746.1


Basic Information

Item Value
RNA id XM_036951746.1
length 4862
RNA type mRNA
GC content 0.56
exon number 22
gene id LOC110496916
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9586941 ~ 9688733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAACAGCTGTAGTGGGATCTCCGCACAACATCACAGCGCCTGCAAAGCCAGCCAGGCAGATAGCCACTTGGTAGGAGAGAGACACGTACCGGACAGTGGATACTCTATGGGCTACTGTGCATAGGCCAACGCGCTCTGCTTCAGCCTTCGTATGAAACTAACTTTCTCCAGCAACGTAAATGCACCAATAAAGAAAGGTGTGTCCTGTGAGGACCAGTTAGAGGTATGGTGGGCGTGGTTGGCCCCGTAACCATGGCGACGTCTCTGTGGGAGGTTGTGTCCCTTCCTCCCGTTGGTCTACTGCTGCTcctctgcctgccactctgtctATGCCAGCAGCCATTGGTCAACTTTGAGAGCCCGTTCCCACCCCTACTGGAGTGTACCAGGAAAGTTCATCCCATCGTCCCATACAAAGCATTGAGTCCCTGGATGTCAGGATTCTCTCGTCCCGGAGTGAAGGACTTTTCCCAGCTGACCCTTGACCTGACCAGAAACCAGCTGATTGTGGGAGCTAgAAATCACCTCTTCAGACTGAGTCTCAGTAATGCTTCTCTCTTACAGGCAGTAGAATGGGGACCAGATGAAGACACCAAGCGGTCCTGTCAGAGCAAAGGAAAGACAGAGGATGAATGTCAGAACTACATCCGGGTCCTGCTCATCACCGGGAGGCGGATCTTTACCTGTGGAACCAACGCCTTTACCCCCGTCTGCACCACCcggcagATAGGAAACATCAGTCGGGTGATGGACACGGTGAACGGGGTGGCGAGATGCCCCTACGACCCGCGTCACAACTCCACTGCCATGGTAACAGAGAAGGGCGAACTCTACGCCGCCACTGTCATCGACTTCTCGGGTCGTGACCCCGTCATCTACCGTAGCCTTGGTAACATGCCGCCgctgcgaacagcccagtacaacTCCAAATGGCTCAACGacccTCACTTTATCTCAGTCTACGAGGTGGGTCTCTTCACCTATTTCTTCCTGAGAGAGAACGCAGTTGAACACGACTGCGGTCGCACCGTGTTCTCCCGGGTCGCCCGGGTCTGTAAGAACGACGTGGGCGGTCGCTTCCTATTGGAGGACACTTGGACTACGTTCATGAAGGCGCGGTTGAACTGCTCGCGGTCAGGAGAGATCCCCTTCTACTATAACGAGCTGCAGAGCACCTTCTATCTGCCCGAACAGGACCTCATCTACGGTATCTTCACCACCAACGTGAACAGCATCTCTGCGTCGGCTGTGTGTGCTTTCAACCTCAGCGCCATCACCCAGGCGTTCAACGGACCGTTCCGTTACCAGGAGAACCCTCGTACAAGCTGGCTCTCCACCCCCAACCCCATCCCCAACTTCCAGTGTGATACCCTGGAGGAGCGAGGTCCAGGGGAGAACCAGACGGAGCGCAGCCTGCAGGACGCCCAGCGTCTCTTCCTCATGTCTGACGTGGTGCAGCCCGTCTCCACCGACCCCCTCCTGTACCAGGACAACATCCGCTTCTCCAAGCTGGTGGTGGACATCGTGCAGGGCCGAGACACCCTCTACCACGTCATGTACATCGGCACTGAATACGGCACCATCCTGAAGGCCCTCTCCACAACCAATAAGAGCATGCGGGGGTGTTACCTGGAAGAGATGAGGCTCCTCCCCGAGGGCGAAAGCGAGCCAATCAAGAGCCTTCAAATCCTCCACAGCGATAGGTCGTTGTTTGTGGGGCTTAGCGACAGGGTGCTGAAGATCCCACTGGAAAGATGCTCCAGCTACAAAACTGAACGGCACTGCCTGGACGCCCGAGACCCCTACTGTGGCTGGGACCGTAAGCAGAAGCGCTGCACCACCATCGAGGACAGTTCCAACATGAGCCAGTGGAGCCAGAATATCACTGAGTGCCCGGTAAGGAACCTGACCCAGGACGGTGGCTTCAGCCCCTGGGCGCCATGGCAACCCTGTAACCATGACGACAGGGAGGGAGCCAGCACCAGTTGCGCGTGTCGCTCACGCTCTTGTAACAGTCCAGTCCCTCAGTGTGGAGGCTCCAACTGCAAGGGCCCCACCATCCAGGTGGCCAACTGTTCCAGgAACGGAGGCTGGACCCCCTGGTCCACCTGGGGTCAGTGCAGCACCAGCTGTGGCATCGGGTACGAGGTGCGCCAGCGCTCCTGCAACAACCCCTCACCCCGGCATGGGGGGCGTGTCTGTGTGGGACAAGGCCGAGACGAGAGgctGTGCAATGAGAAGAGCCCATGTCCCCTGCCTGTGTTCTGGTCATCTTGGGGCTCCTGGTCTCAGTGCAGTGCAGAGTGTGGAGGAGGGGTCCATTCCCGGGTCAGGAGCTGTGAGAAGGGGAACACCTGCCCAGGATGTgctctgGAGTACAAGACTTGTAACCTGGAGGCGTGTCCGGAGGTCCGTCGCAACACCCCCTGGACCCCCTGGATGCCGGTGAATGTGACCCAGGACGGGGCCCGCCAGGAGCAGAGGACCCGCTACACCTGCAGGGCCCTCCTTCCAGACCCTCATCAGCTGCAGCTGGGCAAGAAGAAGGTGGAGACCCGCGTCTGCCCCAATGACGGCACCGCCGCCTGTGAGACTGAAGCCCTGGTTGAAGACTTGGTCAGGGCCAGTGGAGGAGGCAGTAGTGGTCGACCTTTGCTCCGACAACCAGGTGGCACCAGGTGGTCGCCGTGGGAGACATGGTCGACCTGCTCCCAGGAGTGTGCCAAAGGCTTCCGCACGCGCAAGCGCACCTGTGCCTCAGCCGAGGACAAGAGCAGCCCCAGTGCCTGTAGTGGATCCCCAGTGGAGTACCAGGACTGCAACTCCCAGCCCTGCCCAGtgaaAGGAGCCTGGTCGTGCTGGGCGTCATGGTCTCACTGCTCCGCCACCTGTGGAGGTGGGCACTACCAGCGTACCCGTACCTGTAGCAACCCTGCCCCCGCCAACGGAGGTGACATCTGCATCGGCCTGCACACTGAAGAGGCCCtgtgcaacacacacacctgtgaagGTGGCCCAAGGTGGTCAGAGTGGGGGGAGTGTGACGAGGAGGGACTGCAGCATCGCAGCAGGGAGTGTGGGGAACGGGAGGCAGACCCCAGCCTGTGTCAGGGCAATGCCACCGCGAGCAGGCCCTGCCAGCCCCCCGAGGTGCCAGTCGTTCTGCCTGGACAGGATAACGATCAGCGCTGTGGGGccTTCTCTCTGTTCCACCTGATGGCCACGGGAGCGTTGTGTTTCTTTGCAGCGGTGGGGCTGTCGGTCCTGGTCTACGCCTACTGCCAACGACTCCACAAGCCCTCCCAGGAGTCAGCCGTCATCCACCCCACCACGCCCAACCACCTCAGCTATAAGGGCAACACGACGCCAAAGAACGAGAAGTACACCCCCATGGAGTTCAAGACGCTGAACAAGAACAACCTTCTCCCGGACGAGAGCTGCAACTTCTTCCCCTCGTCCCTCtcgcccctcccctccctcccccagaatAACGTTTACACCACCACCTACTACCCAGCACCCCTGGGCAAATACGACCACCCCTTCCACCCCGACTCACCTTGCAGGAACTATATGCACCACAGTTGagacaggacccccccccccccctttccaacTCTCTTCTCTATGGGAAGTTGGAAACACTCCTGCACCCCAGACCCTTCaccgtttcctctcctctcctctattgaGTGTGTACTTTGCTACAGTGAGGGGGAGCTGTGTTAACGACCGGGCAGACCCTTGAACTGGGTGTGTCCTCTCAAGGTCTGAACCATGCACGTTCTTCTCAATCACCAGTGCGGGCGGAGGTTGAACTGTCCCTGTCAACCAACAGGACAATAATTTCGTATCATTGTGACTGTTCAGTTGATATGACTGTTTTATGACGTTGTTTTTCTACTCTACTGTGCAGTACATCAACTCATCTCAAGACGAGGAAGTAGACTGGACCATGTGGAATGCTGGGAGTTGGAGTCTTATGAGGGAGCTGGGCTGTAGCAGCCTTATGGTTCCGTATGGAGATTCACTACATGTGGAATCTGTTCTAAAACAACACTGTTAAAAGTCTCCTGTAAAACCCTACGGTATCCGATCATGTATATCACAAAAACCCACAGACTTCACATTCAATCTGAGGAGAATATAAGACATTGTGGCTGGTTTGTATTCGATATAGACGGCAAAATCAACCGATCCCAAAGGATACCGTACCGGAATATGCTGACCAAGACACCTTCCAGCTCTAAAAACCGGCTTTATGATGGTGAAAGTGCAGATCTCATTGACACTGACAGTATGGGCACGTTTGTCATACTTCTGCTCACCAACTTGTTTCTCCTGTCTGTTTGGACACGCTGCGTCAGATTAGCCTCATGGTCAGGTGCTCCCGCAGTGTGGActaacagagaggggaagagagtgaggggCTGGTACTGCTTTCATCTGAGCAGCCCAAGGACTCCTGTatcacgtcccaaatggcactctattccctatatagtgcactacttttgactagagcccaatGGGCCCCGGCTGaaaggagtgcactatgtagggaatagggagccaaatGGGGCGTGACCATGGCCTCTGAAAGGGTTTATAATCCTGTAACTACCTGCACCGACACCCAAAAATGACAATGGCGGCGATTCAGAGTCGATGTAAATTTTgagaaaaaacatgtattttgaaCAACCCAGATACTCAGCTAAGGCTCAGCGATCCTgtctcaccaccctcatcccttcaaatggatagctgtctcaccaccctcatcccttcaaatggttcgctgtctcaccaccctcatcccttcaaatggatcgctgtctcaccaccctcatcccttcaa

Function

GO: NA

KEGG:

id description
K06841 SEMA5; semaphorin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1734603 lncRNA downstream 15345 9571322 ~ 9571596 (-) True G1515493
TU1734553 lncRNA downstream 35958 9480326 ~ 9550983 (-) True G1515458
TU1734730 lncRNA upstream 4286 9693019 ~ 9693270 (-) True G1515605
TU1734734 lncRNA upstream 7538 9696271 ~ 9697825 (-) True G1515609
TU1734735 lncRNA upstream 9437 9698170 ~ 9698369 (-) True G1515610
TU1734744 lncRNA upstream 20615 9709348 ~ 9709580 (-) True G1515618
TU1734746 lncRNA upstream 23670 9712403 ~ 9712729 (-) True G1515620
XM_036951735.1 mRNA downstream 16366 9551258 ~ 9570575 (-) True LOC110497032
XM_036951744.1 mRNA downstream 58638 9526170 ~ 9528303 (-) True LOC110495573
XM_021573032.2 mRNA downstream 60962 9520263 ~ 9525979 (-) False LOC110497029
XM_036951743.1 mRNA downstream 60962 9520263 ~ 9525979 (-) True LOC110497029
XM_036951738.1 mRNA downstream 85705 9488551 ~ 9501236 (-) False LOC110495556
XM_036951755.1 mRNA upstream 78888 9767621 ~ 9785105 (-) False LOC110527257
XM_036951753.1 mRNA upstream 78888 9767621 ~ 9785106 (-) False LOC110527257
XM_036951752.1 mRNA upstream 78888 9767621 ~ 9785107 (-) False LOC110527257
XM_036951754.1 mRNA upstream 78888 9767621 ~ 9785107 (-) True LOC110527257
XM_021596447.2 mRNA upstream 139508 9828241 ~ 9829247 (-) True LOC110519295
TU1734564 other downstream 93059 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 107723 9478676 ~ 9479218 (-) True G1515456
TU1734435 other downstream 163360 9422569 ~ 9423581 (-) True LOC110495568
TU1734456 other downstream 193333 9392696 ~ 9393608 (-) True LOC118941087
TU1734207 other downstream 433149 9140546 ~ 9153792 (-) True LOC110496958
TU1735073 other upstream 72740 9761473 ~ 9765225 (-) True G1515880
TU1735278 other upstream 486126 10174859 ~ 10195515 (-) True LOC110516308
TU1735300 other upstream 521585 10210318 ~ 10210833 (-) True G1516062
TU1735349 other upstream 570092 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 1164836 10853569 ~ 10856314 (-) True G1516562

Expression Profile