RNA id: XM_036951753.1


Basic Information

Item Value
RNA id XM_036951753.1
length 3892
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110527257
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9767621 ~ 9785107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATTTTGGCTTCAGGGAAAACCAGACGATTCCATTCAGAAATCCACAGTCAAGCTTTGTGTGAGAAGAGCATAGACGACAACCCTGAAAGAACGTTTGCAACAGCGTGGAGTGAAACATAACTTATTTTCAACATTGCAAAGGAATTAAATCTTCGCAAATAAAGAACAGACAGACGAACGAGCGTCTCCTGCTGCTACCGTcagcccctcctccccctccacccctccaagACCAACTTCAGTCCCGAGGGCGTGAAGATATTCAGGCAACATGGATGGATTTTATGACCAGCAAGTCCCTTTCATGGCCCCCTCCAGGAATTGTCACGTGGAAGAACCAGCGAACACGCCATTTAACGACCGGAAGAGAAAGTTTGTTGACACTGAGCTCGCCCAGGACACAGAAGATCTCTTTCAGGACCTCATGCAACTTCAAGAGACATGGATTGCAGAAGCTCAGGTGCCTGATGACGAACAGTTTGTCCCAGATTTCCAGTCGGATAACCTAATGTTCCATGGACCTCCAGCCAATAAAGTGAAGCGAGAGTCCAGCGCCTCCAGAGATCTGTCCCCCTGCAGTCAGGAACAACAGAGACTCTACACAGACAAGTGCCTTTACAGCTACAGtGCCTACAACAGGAAGCCACTTGGCATCAATACTTTAACCCCACCCTCCACACCCGCCTCACCTTGCAGCCCCGCCCCCACCCCGGGGACACACCCCCTACAGAGGCAGATCACGTCCCCTGTCCAGGCAACACACCCCGGCCACAGTCGTCCAACTCACGGGCACAGCCCCTCCCACCACCGGACACTCCCGCCACACCCGAGCCAAAGCCAGCCTTTCGCCGTGCCCCGCCTACCTGTCAATCACTCCGATGCCTCCTACAGCTCAGAACACAGGTTCCAGCGGCAGCTCTCTGAGCCATGTCTGCCTTTCCCTCCGCCTGATGGTGCCGCCTGTACCCCttaccctcctcagccccatcaCCCCCACCGGGCCCCCCTGTCCCGGGACGGCCGCCCCATCTACCAGCGGCACCTGTCAGAGCCCTTGGTCCTCCTCCCTGCTCAGGGCTTCAAGCAAGAGCTGGTGGACCTCCGTTACACCGAGCAGGGGGTCCCCACCATGGGCCCTCCCCGCACCCCGTTCCAGGGCCTCTCTATAAAGCAGGAGCCCCGGGATTTCTGCTTTGACCAAGAAATGCAGAACTGCCAGTCTTCTTTCAGGAAGTCCGGTAACTTCTACCAAAACAGTGATGGGTTGATCTACGACGGAGAGCCTCATCTGTACAACGACGACACATGCGTGGTTCCAGAGAGACTAGAAGGCAAGATCAAGCAGGAGGCCGGAGTGTTCCGGGACGGACCGCCCTACCAGCGCCGAGGTTCCCTGCAGCTCTGGCAGTTCCTGGTCACTCTGCTGGACGACCCGGCCAATGGTCACTTCATCTCCTGGACCGGCCGCGGCATGGAGTTCAAACTCATCGAGCCCGAAGAGGTGGCTCGGCGCTGGGGCCTCCAGAAGAACCGTCCTGCCATGAACTACGACAAGCTGAGCCGCTCTCTACGCTACTACTACGAGAAGGGCATCATGCAGAAGGTAAAGGTGGCTGGAGAGAGGTACGTGTACAAGTTTACGTGTGACCCCGAGGCGCTCTTCTCCATGGCCTTCCCTGACAACCAGAGGCCCAGCCTGAAGCAGGACCCGGACTGCCTGCCGCCGTCTGCGGGGGAGGACGACACCACCGTGCCCCTGGCCCACTACGAGGATGGCTGTGGCCCCTACCTGGCCGACGGAGGGGAGCGGTGCGTCTCCTTACTGGGCTTCCCCGATAACTATTCATTCTGAATGTTCTGACCAATGACGGAATAAAGACAGCTGTCATCTGGTACCCTGCCACACCCCTACCCTACCCCAAACTCTGGTCCCCTAGCTACACACCACTACCCTACCCCTTGTCCCCTAACTGTACACTCCAACCCCACATCCCAAAACTACACACCACTACCCTACCCCACATCCCATAACTACACACCCAGAGCCCAAACCCTAGTCCCCTAACTACACACCCAGAGCCCAAACTGCTGAGCGGATTTGGAGCTCTGTAACCCCCCTCCCCTACTCCTATCCCAAACTCAGCTCCTCTTGCCAGTCTTGAGATTACCCTCCCCAAGTCCCAAGGAAAAAACAGTCAACCCTGAGACGGCCATCTTGCTTATTCTTTGCCCTCTGTTATCAAACTGAATTGTGGCGAAAGGTGTGTGGTCCTCATCAACATAAACTGAACTGAGTGATCTCCCTTACGGGGGTTGAGCGAGGACACTGTTCACGTGATTTATAATGGGACTCAAGTAATGGGCACGAGTGTGCCAGGATTGTAGCCAATAGCCATGCAGTTTCCACAATCTGCTCGGTACGAGTATGACAAGTAATGGCAAGGATATAAAACATTGATAAAGCAATCGTTTTATGGCTTGATCCCAAACAAAAAGAGTAGTACACTTGACACGCGCACAGGGGCTTCACCTTGGAGAGAATCTACGAACCTTAGTACCGCAGGTGGTGATGTAATGTAGCTCTGTATGCAATGAATGGGCCAAACACACAGGCAACCAACCGACTGTTCTTATTAATCCATAATACATCGTACGACTATAAAGAAGCTGGGACGCGAGTACCCCGGAGCAAGTTGCTTTGGCCATTcattaaaaacaacaacacactgaAATCCAATCTGAAATGGGAGAGGTGGACTCCGGACTCGCTAGCTCAGCATTCTCTTCAGACTCTGGGGATTTATTTTTTCTCTTACCCAAAAATGTAAAGCCTTCCCGGTGCTGTTTTACTCCTGATGTTGGCGTGTCCTCTACCAGATGTATCtttccaccgcatttaaccatggcagcTCTTTACTCCTGATGTTGGCGTGTCCTCTACCAGATGTATCtttccaccgcatttaaccatggcatcTCTTTACTCCTGATGTTGGCGTGTCCTCTACCAGATGTATCtttccaccgcatttaaccatggcatcTCTTTACTCCTGATGTTGGCGTGTCCTACCAGATGTATCTTTCCAATATGTTTTTTAGCTCTTTCATTTGACTCATTTTGTCGTAACATGTAAAAGGGACGCGCATACAAAACAGTATTTTTCCTGAAGTGTTGACTTCCTATTAAGAAGTGTGTattgaaaaatacatgtttatgtACTATGACGATGACAAAAGTACTGCAACTGTCACGCAGTCCCTTCTCCAAAAACTGTAACTGCCAATAGTAAGCTAAACAGGGGGGGGCTCTACTCGCATTTTCTCACAGAAAGCTGTACCAACCTATTGCTGTACCATTCAAGTTTTCTGCTTTTCGTATAGTTTATCGGGGAGTATATGAAACAAAcatctaaaatgtaaatgtatatatgAATATATTTTTGCAAAGTCATATGTTTTGACATTGTACACGCTGGAATGTTTGGCCTGGTAACGGGTTTGCATCCTTTAATTCTTGTCATGAAGTTACGGCGTCCACATTAGGACATATCCCCAGTCTCTGCAGGGGTTGTCTGTCAAGTCCTGCAAAGACTGAGGCTGTCCTAATGTGGACACCGTATTGAGGCAGTGGGTTGGAGCCTAGAAAGACCTCCCCGTTGACTGTGTGGTGGGCTGTGTCGGCGTCACACGTGTGTAACAGTATATTTTGATATGATTCTGTCTATATGTGGGTTGCGGGGTATCTTGTCCACGACGTTGAAGTTTGCTGGCACTTATACAAgtgacaacccccccacccccttccccACAAAAACAATGTGTGCCTTCCACTGCTTTTGGTTGATTTTCTATACTGGATACAATAAACTATACTTTCTGCTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735066 lncRNA downstream 19217 9747738 ~ 9748404 (-) True G1515875
TU1734759 lncRNA downstream 45347 9721764 ~ 9722274 (-) True G1515632
TU1734746 lncRNA downstream 54892 9712403 ~ 9712729 (-) True G1515620
TU1734744 lncRNA downstream 58041 9709348 ~ 9709580 (-) True G1515618
TU1734735 lncRNA downstream 69252 9698170 ~ 9698369 (-) True G1515610
TU1735113 lncRNA upstream 31700 9816806 ~ 9826743 (-) True G1515904
TU1735120 lncRNA upstream 52571 9837677 ~ 9837914 (-) True G1515911
TU1735146 lncRNA upstream 84544 9869650 ~ 9869889 (-) True G1515932
TU1735151 lncRNA upstream 96680 9881786 ~ 9882092 (-) True G1515937
TU1735156 lncRNA upstream 99914 9885020 ~ 9886573 (-) False LOC110495582
XM_036951746.1 mRNA downstream 78888 9586941 ~ 9688733 (-) True LOC110496916
XM_036951745.1 mRNA downstream 78889 9586941 ~ 9688732 (-) False LOC110496916
XM_036951735.1 mRNA downstream 197046 9551258 ~ 9570575 (-) True LOC110497032
XM_036951744.1 mRNA downstream 239318 9526170 ~ 9528303 (-) True LOC110495573
XM_036951743.1 mRNA downstream 241642 9520263 ~ 9525979 (-) True LOC110497029
XM_021596447.2 mRNA upstream 43135 9828241 ~ 9829247 (-) True LOC110519295
XM_036951405.1 mRNA upstream 49146 9834252 ~ 9835816 (-) True LOC118941060
XM_036951758.1 mRNA upstream 53463 9838569 ~ 9842297 (-) False LOC110495576
XM_036951757.1 mRNA upstream 53463 9838569 ~ 9842785 (-) True LOC110495576
XM_021608432.2 mRNA upstream 63372 9848478 ~ 9849459 (-) True LOC110527264
TU1735073 other downstream 2396 9761473 ~ 9765225 (-) True G1515880
TU1734564 other downstream 273739 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 288403 9478676 ~ 9479218 (-) True G1515456
TU1734435 other downstream 344040 9422569 ~ 9423581 (-) True LOC110495568
TU1734456 other downstream 374013 9392696 ~ 9393608 (-) True LOC118941087
TU1735278 other upstream 389753 10174859 ~ 10195515 (-) True LOC110516308
TU1735300 other upstream 425212 10210318 ~ 10210833 (-) True G1516062
TU1735349 other upstream 473719 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 1068463 10853569 ~ 10856314 (-) True G1516562
TU1736140 other upstream 1263299 11048405 ~ 11048928 (-) True G1516757

Expression Profile