RNA id: XM_021570909.2


Basic Information

Item Value
RNA id XM_021570909.2
length 605
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC110495583
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9878673 ~ 9879663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCCCCTCACGCAACCATGACAATGGGAAAGATCATCTTCTATGAGGACAGGAATTTCCAGGGTCGGCACCATGAGTGCATGAGCGACTGTGCCGACCTGCACTCCTACTTCAACCGCTGCAACTCCATCAAGGTGGAGAGCGGCATGTTCATGGTCTACGAGAGGCCCAACTACACTGGCCACCAGTACTTCCTGAGGAGGGGAGAGTACAATGACAACCAGCGCATGATTGGCATCAACGACTGTATCAGGTCCTGCCGCATGATCCCCATGCACCGCGGCTCCTACAGGATGAGGCTGTACGATCGCCCCGACATGAGTGGCCAGATGCAGGAGCTGAACGACGACTGTCCCAATGTCCAGGACCGCTTCCGCATGTCCGACATCAACTCCTGCAACGTGATGGACGGCCACTGGCTCATGTACGACCAGCCCAACTACAAGGGCAGACAGTACTACCTGAAGCCTGGCGAGTATCGCAGACCCAGCGACTGGGGTGGCCTGAGCCCCAGGATCGGATCCCTCCGACGGATCTCTGACTCCAACAACTAAAAGTTCTATGTTCCATTTCTGTTCTCAATAAAGCTGCATGTTCAACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735146 lncRNA downstream 8784 9869650 ~ 9869889 (-) True G1515932
TU1735120 lncRNA downstream 40759 9837677 ~ 9837914 (-) True G1515911
TU1735113 lncRNA downstream 51930 9816806 ~ 9826743 (-) True G1515904
TU1735066 lncRNA downstream 130269 9747738 ~ 9748404 (-) True G1515875
TU1734759 lncRNA downstream 156399 9721764 ~ 9722274 (-) True G1515632
TU1735151 lncRNA upstream 2123 9881786 ~ 9882092 (-) True G1515937
TU1735156 lncRNA upstream 5357 9885020 ~ 9886573 (-) False LOC110495582
TU1735157 lncRNA upstream 6601 9886264 ~ 9888155 (-) False LOC110495582
TU1735153 lncRNA upstream 9808 9889471 ~ 9893229 (-) False LOC110495582
TU1735152 lncRNA upstream 10343 9890006 ~ 9893229 (-) True LOC110495582
XM_021608432.2 mRNA downstream 29214 9848478 ~ 9849459 (-) True LOC110527264
XM_036951757.1 mRNA downstream 35888 9838569 ~ 9842785 (-) True LOC110495576
XM_036951758.1 mRNA downstream 36376 9838569 ~ 9842297 (-) False LOC110495576
XM_036951405.1 mRNA downstream 42857 9834252 ~ 9835816 (-) True LOC118941060
XM_021596447.2 mRNA downstream 49426 9828241 ~ 9829247 (-) True LOC110519295
XM_021570907.2 mRNA upstream 3132 9882795 ~ 9884909 (-) False LOC110495582
XM_036951763.1 mRNA upstream 3132 9882795 ~ 9884909 (-) False LOC110495582
XM_036951762.1 mRNA upstream 3132 9882795 ~ 9888187 (-) False LOC110495582
XM_036951760.1 mRNA upstream 3132 9882795 ~ 9888194 (-) False LOC110495582
XM_036951761.1 mRNA upstream 3132 9882795 ~ 9888194 (-) False LOC110495582
TU1735073 other downstream 113448 9761473 ~ 9765225 (-) True G1515880
TU1734564 other downstream 384791 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 399455 9478676 ~ 9479218 (-) True G1515456
TU1734435 other downstream 455092 9422569 ~ 9423581 (-) True LOC110495568
TU1734456 other downstream 485065 9392696 ~ 9393608 (-) True LOC118941087
TU1735278 other upstream 295196 10174859 ~ 10195515 (-) True LOC110516308
TU1735300 other upstream 330655 10210318 ~ 10210833 (-) True G1516062
TU1735349 other upstream 379162 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 973906 10853569 ~ 10856314 (-) True G1516562
TU1736140 other upstream 1168742 11048405 ~ 11048928 (-) True G1516757

Expression Profile