RNA id: XM_036951763.1


Basic Information

Item Value
RNA id XM_036951763.1
length 1003
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110495582
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9882795 ~ 9893229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgatggtccTATACCGTAGTGTTGTGATGACTTTAAGAGAATGAATGAGGGCCTGCAGATACTGTAGCACTGTGATGATGCATTCCAAACAGTAAACGTGTCCCTTTATTGTGGATTACTGGATAATAAAATTTATTTTGGTAGACGTACAGTATCAAGAGGGCCGTGGTCCACGGCACGTGGGTCAATAATGTGCAGGGCTAGGACATCTGCATTGATGAATCAGGGGTTTTATCTGTATGGACAGGATCAAGGCCTTGGCAGCATCTCAATGCCACCAAATCCCTGCTCATTAAAATAACAAAACCTCTGATCCGGCAACCTTTGATTGAGTTTTATAAAAGAGGCTCGTGGCCCTCTGTCCTGGATATTGCATTGAGGAAGAGTGCTCTAACAACAGCCCAGACATGAGTAAGATCACGTTCTACGAGGATAAAAACTTCCAGGGTCGCTCCTATGAGTGCGACACGGACTGCCCCGATGTGCACCCCCATTTCAGCCGCTGCAACTCCATCAAGGTAGATAGCGGCTGCTGGGTGCTGTACGAGAGGCCCAACTATGCAGGCTACCAGTATGTACTGACCAGGGGAGAGTACCCAGAATATCAGCGCTGGATGGGCTACAGCGACACCATTCGCTCCTGCCGTACCTTTTCTTATGTGAGTAGCCGGGAGGCCAGCGGCAGTCCCTACCGCATGAGAATCTACGAGAGGCCAGACTTCCAGGGACAGATGATGGAGTTCGGCGAGGACTGTGACTCCGTCCAGGACCGTTTCCGTAGCCGTGACATCTACTCCGCCAACGTCATGGATGGCTACTGGACCCTCTACGAGCATCCCAACTACAGGGGCCGCCAGTACTTTATGAGGCCCGGCGAGTACAGGAAGTTCAGCGAATGGGGAGCCACCTGTGCCACCACCGGCTCCTTCCGTAGGATCACCGACTTTTAGGCCCAACGTCCTCTCCACTCTGACCAGTCAATAAAACGATTGTTTAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735151 lncRNA downstream 703 9881786 ~ 9882092 (-) True G1515937
TU1735146 lncRNA downstream 12906 9869650 ~ 9869889 (-) True G1515932
TU1735120 lncRNA downstream 44881 9837677 ~ 9837914 (-) True G1515911
TU1735113 lncRNA downstream 56052 9816806 ~ 9826743 (-) True G1515904
TU1735066 lncRNA downstream 134391 9747738 ~ 9748404 (-) True G1515875
TU1735156 lncRNA upstream 111 9885020 ~ 9886573 (-) False LOC110495582
TU1735157 lncRNA upstream 1355 9886264 ~ 9888155 (-) False LOC110495582
TU1735153 lncRNA upstream 4562 9889471 ~ 9893229 (-) False LOC110495582
TU1735152 lncRNA upstream 5097 9890006 ~ 9893229 (-) True LOC110495582
TU1735167 lncRNA upstream 19688 9904597 ~ 9904872 (-) True G1515944
XM_021570909.2 mRNA downstream 3132 9878673 ~ 9879663 (-) True LOC110495583
XM_021608432.2 mRNA downstream 33336 9848478 ~ 9849459 (-) True LOC110527264
XM_036951757.1 mRNA downstream 40010 9838569 ~ 9842785 (-) True LOC110495576
XM_036951758.1 mRNA downstream 40498 9838569 ~ 9842297 (-) False LOC110495576
XM_036951405.1 mRNA downstream 46979 9834252 ~ 9835816 (-) True LOC118941060
XM_021570914.2 mRNA upstream 8476 9893385 ~ 9900716 (-) False LOC100653460
XM_021570911.2 mRNA upstream 8476 9893385 ~ 9900718 (-) False LOC100653460
XM_021570913.2 mRNA upstream 8476 9893385 ~ 9900718 (-) True LOC100653460
XM_036951765.1 mRNA upstream 115131 10000040 ~ 10057419 (-) False LOC110514354
XM_036951764.1 mRNA upstream 115132 10000041 ~ 10057418 (-) True LOC110514354
TU1735073 other downstream 117570 9761473 ~ 9765225 (-) True G1515880
TU1734564 other downstream 388913 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 403577 9478676 ~ 9479218 (-) True G1515456
TU1734435 other downstream 459214 9422569 ~ 9423581 (-) True LOC110495568
TU1734456 other downstream 489187 9392696 ~ 9393608 (-) True LOC118941087
TU1735278 other upstream 289950 10174859 ~ 10195515 (-) True LOC110516308
TU1735300 other upstream 325409 10210318 ~ 10210833 (-) True G1516062
TU1735349 other upstream 373916 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 968660 10853569 ~ 10856314 (-) True G1516562
TU1736140 other upstream 1163496 11048405 ~ 11048928 (-) True G1516757

Expression Profile