RNA id: XM_021570914.2


Basic Information

Item Value
RNA id XM_021570914.2
length 4052
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC100653460
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9893385 ~ 9900718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCCATCTGGACAAGTTGAGGGCGGCAGAGCCTGGAAGAGCGGGAAATAAAACCCcattaaactagctagctaacctgcGACTGCTCTAAAGTTTCCTACCTTTGGCACATGGAAACAAACTAACAATAGTCTATAGATACATGTTTCTCTGGTTAAATACAACTATAACAATATAAATGTAACCCATGTAGCCCACCTATGAATATGAGTGGTTTAGGACGAGCTCAATCTGGTAAGCGCCAGATATTTTCCCTTCGTTCATACTGCAGATAGACTGGTGTTGATGACTCTGATACAGGCTCGGCTGTCCCTGGCTGTGTGCACCTCCCTTGCAAGGTGTTTTAACTTGAGCTGCCATTGTCTTGCTGAATTATTTGTTTCCACTTTACTTGTTCACGACATCTAGTTAAGCACTGTGTCCACGATGGAGAACGAAATAACCACCagcactccctctcctcctcctgctccagtgTCTCAAGACCCCAGCAACGacacctctccctctcaccaTGCCCTCCGCTTTGGCACCGTCATCCCTAACCGCATCTTTGTGGGAGGCATTGATTTCAAGACCAATGAGAGCGACCTGAGACGCTTCTTCTCCCAGCATGGAGCAGTGAAGGAGGTGAAGATAGTGATTGACCGTGCTGGGGTGTCAAAAGGATATGGCTTTGTTACCTTTGAGACCCAGGAGGATACAGAGAGAATCCTTCATGATGCTGACAGACTGTGCTTCCGGGACAAGAGGCTCAACATCGGCCAGGCCGTCCGCAAGCAACAAGTGGGAGGTCACCAAAACAGCTTCTCTGTGTCCAGCCATACTCCTGCCATGATACCCACCCCCTGTGGAACCATGTACCTCACCACCCCTACGGGGTACCCCTACACCTACCACAACGGAGTGGCTTACTTCCACACCCCAGAGATGAGCCCCTCCGCCCCCTACCACTGGCCCTCCCGCTCAGTGCCTGGCTCTCCAGTCATGCTGACCCACCAGCCTCCACCCATCTACCAGCAGCCAGCCTAccatcactaccagGCCCCTACACAGTGTCACCCTAGTCACCTGCAATGGAACGTTCCTCAGtctccaGTGCCCTCCAGCCCAGTGTTGTACATGCAGCCCTCTGAGCTCCTGTACCAGCCCATGGAGCAGCCCAGCGACGGGGGCTGTGTCCAGCCTGCCATGCCCCTCATAGAGGCCCCCATCCCAGAGCAGCAGTTCATCGACCACATGGTGCAACCAGCCTACAATCACACGTTATCATACTACCCACAAAGTCCAGGGGGGATGACACCTGTGATGATACAGCAAGAACCAGGAAAGGAACAGAAGTTCCACGCCATGAGGCGAGGTTACCCCTCCTCGCCGGTCAGCCTGAAGCCCAGGTACGGCCGCAACCCGCACTACGCCCACCTGCGCAAGGAGTACCGCCCAGAAATCACCACTGACCCCTCCCCTCCGACCGCCACCGAACCACTCAAGTAGAGTATATCCACGTTTCCTTTCAGCCAATGAAACGCCCATCTCCTCAGGCAGAAAGATCTCTCCACCCGCTTGTCAGTCTCTCCATGACCCTGTCTCCTCCAACCCTTCACACGCATCATATTATTCAGTCCAGACAACTATGTGCTCGCTGAATGTTCATCTGTTTAGTATAATTTAACAGAATATTGACAATATGAATCATTTTAGCTACTAAAAAGTACTGTAAGCACTATGATGTAAGTGCTCGTTCTATCACTTCCGGACTGTGAAAAGGTGCATAGATTCCTCTGGTGTTTTTTCCACAACTCAGGGAGGGATAACTAGCTCCTGGTACTGcattgtactgttgaactgtTTCATAACTAACCTAATGCACGATTGAGCTTAAAGTTAAGCTAAACAATCTTTTGTAACAAGAATGTTCCTCCTTTGGCATTTGTGTCAAACTTTTGCCATGTAATCGTTCAGAGTATAGAAGAAAAAGAGAACTATTTCCTGATACTGCTTTATTTTGGCCTATTGGCCAATCACACGTTTTCTTTTTCAAATTAGCTCTTAACGCAAAGCAAAAAAAAGTCTTAACGAAGATTACTGCCAATATTAGTTCTAAATAAAAGCTCTCTATCTGCCATTGGGCATGTTTTATCTCAATGGTATTAGAATAGTCAAGATTACTGTCTTTATGATGTGACTGCAATACATGttggaaaatgtattttaaaataatTAGGCTGCTGTCACAGAAGAGTGCAAATAGATCCCTAGAGAGTTAATCGTTACATAATTCTCCAACTGGATGAAAAAATACATAACCAGGAGATTATTTTATACACTTAGCAtttttatgtatctcatgttttCAAGAGCTGTTTCATATAGATTTTGCTGTGATTGTGAGTCTCTAAAAAACAATGTGCCCTCCAGATGAGGGGGTAACATCAAAATAACTCTGTCCACTGGACTGGGACCACAAATAAAGTACAATGAACATCAGTCAAACAGATTCACATGGTGTTTCGTCGGCTCTGTGACGGCTGGGACATTTCAACAGATTCACATGGTGTTTCGTCGGCTCTGTGTGACGGCTGGGACATTTCAACAGATTCACATGGTGTTTCGTCGGCTCTGTTTGACGGCTGGGACATTTCAACAGATTCACATGGTGTTTCGTCGGCTCTGTGTGACGGCTGGGACATTTCAACAGATTCACATGGTGTTTCGTCGGCTCTGTGTGACGGCTGGGACATTTCAACAGATTCACATGGTGTTTCGTCGGCTCTGTGTGACGGCTGGGACATTTCAAGATTGGAAGGTCAACAAGGCAAGCTCTTTTTTTTGCCGCTCTTTCCTGCCTGTAAATTATTCGCCTCGTCTTCATCAACTTCAATCACCCTGGGTTCAGTCATGAGTCACCCATGGTTCACTCAGGTCTACACGGTTTGGTTACTTTTTCTCCTGCATCCTGTCTTGGTCTGCTCCCTCATTGGTTATGCGTGTATTCTGTTaaaaacatttcatttttttacAAATTGTATTCTATAACTATGGGTGTCAGAGTTGAGGTTTAACTAAAGAATTTATGACATCACATATTTCATTGAGgcctatttttttaaataattatttGAATAGCTGGATTGCATGTACTATGAGGTGTCTGGTTTTGTTTTGTGTGAACTGCGATTCATTTTCATTTCATGATCTtccctgtaaaaaaaatatatatatatatatatatataatcagggTAGGAACATCTCGAATTTTCCACAGCGGTTCATATTTGAAAAGTTATGTCGTTTTGCTCTGAAACTTGTTTTCTTGTTGAGAATTGATCATAGTGAAAGTCAATGCCAGAAGAAAACAAATGACAGAATAATTTCATAAATAAGTGCTCCCATGTtctgttaatttatcattaaAATAACCGTTTAGGTCAATTTGATTTGGTCAGTTACTAATAAAACAGAATCAGTTTGATTTGAAATGACATTTTAGGAAGAGTATTTTGTTGTATTCCAAGCATGCCTGTAATTTCTCAATGTTCCATTTTAATAAACAGGTTTTACTCTTTCCATATTGTCATAGCACCACATTGTCAAGTCAATGTGTCTTGCTTTTTAAAACATACATAAATGTTGAACTATTTATTACAATGTTACACGTTTGATGTTCAGTTTGGGGATATTCCACCTCTACCTCCTGTAATCCCATTACTCAATCTGAGGAGCAGATCAACTATGTTTTGCTCCAAAGTACAgccttttaaaaaatgtcataTTGTTTTGGAGTTAAGATATGCTCCGTTCATCTACCCTTTTTACAAATGAGGCTAAAGTTGTCTTGACCTTACAGTGAAGATGTTTTAACATCAGTGCATGTTGTATGTTTTGTATATAGTTCTGAACACTAGCTAACATTTGGATGTTTACTTTGATGTTCTTCTGCACATTACATTGTGCCTTGTTCTTTCTGAATATTGGGGATGTTTAAGACTTGTTGTGTTCAGAAGTGGGTCGTCTTGTTGGTAAGAATAAAGTTTGAACCCTTGAGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735153 lncRNA downstream 156 9889471 ~ 9893229 (-) False LOC110495582
TU1735152 lncRNA downstream 156 9890006 ~ 9893229 (-) True LOC110495582
TU1735157 lncRNA downstream 5230 9886264 ~ 9888155 (-) False LOC110495582
TU1735156 lncRNA downstream 6812 9885020 ~ 9886573 (-) False LOC110495582
TU1735151 lncRNA downstream 11293 9881786 ~ 9882092 (-) True G1515937
TU1735167 lncRNA upstream 3881 9904597 ~ 9904872 (-) True G1515944
TU1735168 lncRNA upstream 4630 9905346 ~ 9905790 (-) True G1515945
TU1735171 lncRNA upstream 12679 9913395 ~ 9914965 (-) True G1515948
TU1735172 lncRNA upstream 14368 9915084 ~ 9915495 (-) True G1515949
TU1735173 lncRNA upstream 15599 9916315 ~ 9916610 (-) True G1515950
XM_036951760.1 mRNA downstream 5191 9882795 ~ 9888194 (-) False LOC110495582
XM_036951761.1 mRNA downstream 5191 9882795 ~ 9888194 (-) False LOC110495582
XM_036951762.1 mRNA downstream 5198 9882795 ~ 9888187 (-) False LOC110495582
XM_021570907.2 mRNA downstream 8476 9882795 ~ 9884909 (-) False LOC110495582
XM_036951763.1 mRNA downstream 8476 9882795 ~ 9884909 (-) False LOC110495582
XM_036951765.1 mRNA upstream 99324 10000040 ~ 10057419 (-) False LOC110514354
XM_036951764.1 mRNA upstream 99325 10000041 ~ 10057418 (-) True LOC110514354
XM_036951767.1 mRNA upstream 173559 10074275 ~ 10117772 (-) False LOC110497040
XM_036951769.1 mRNA upstream 237628 10138344 ~ 10146838 (-) False LOC110497041
XR_005037367.1 mRNA upstream 237628 10138344 ~ 10146845 (-) True LOC110497041
TU1735073 other downstream 128160 9761473 ~ 9765225 (-) True G1515880
TU1734564 other downstream 399503 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 414167 9478676 ~ 9479218 (-) True G1515456
TU1734435 other downstream 469804 9422569 ~ 9423581 (-) True LOC110495568
TU1734456 other downstream 499777 9392696 ~ 9393608 (-) True LOC118941087
TU1735278 other upstream 274143 10174859 ~ 10195515 (-) True LOC110516308
TU1735300 other upstream 309602 10210318 ~ 10210833 (-) True G1516062
TU1735349 other upstream 358109 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 952853 10853569 ~ 10856314 (-) True G1516562
TU1736140 other upstream 1147689 11048405 ~ 11048928 (-) True G1516757

Expression Profile