RNA id: XM_036951771.1


Basic Information

Item Value
RNA id XM_036951771.1
length 3105
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110495586
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10149011 ~ 10158506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTACATTTCGTACACTTCCGCCAATGTTCGTCAATGTCGGTATTCTTCGTGTGGATTTCGTCATTTTCCGTTCGAATTCGAGCCCTGTCGATAGAACTGATTTTCGTCGTCTCCCTCGTTCTCCGTGTTGTTGTTCATCTCGGTGACGCGACAGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGTCTGAATAAAAGTGGAGCTCGGAGGACCCGGGAGTGACGAAGCGAGTCTGTGTCGGGCTCTCCAGAGTTCTCCACCCGCCATTCCAGCCAACTAAATGACCATGGAAGCGGGAGCCGATACACAGCAGGGTGGTGACACAGCTGTTTCTGAGTCTGAGGCCCAGCAGATCACACTTGCCCAGGTGTCTATGGCAGCAGGACAGGTCTCCTCCAGCGGCCCCACAGTCACCCTGGTGCAGCTGCCCAACGGTCAGACGGTTCAGGTCCACGGGGTCATCCAGGCCGCCCAGCCCTCGGTCATCCAGTCGCCTCAAGTACAGACTGTTCAGATTTCAACAGTTGCAGAGGACTCCCAGGACTCCCAGGAGTCGGTGGACAGTGTGACAGACTCTCAGAAGAGGAGGGAGATACTTTCCAGACGTCCTTCCTACAGGAAGATCCTGAACGACCTGTCGTCTGACGTGTCTGCGGTCCCGCCGATCGAGGAGGAGAAATCGGAGGACGACTCGACCCCCGCCATCACCACCGTTGCCATGCCCACATCATGCCCCATCTATCAGACGGCCAGCGGCCAGTACATTGCCATCACCCAGGGCGGCGCCATCCAACTGGCCAATAACGGTACGGATGGCATGCAGGGGATGCAGACCCTGACCATGACCAACGCGGCGGGCGCCCAGCAGGGCACCACCATCCTGCAGTATGCCCAGACCTCCGATGGACAGCAAATCCTGGTGCCCAGCAACCAGGTGGTAATGCAAGCTGCCTCTGGAGAAGTGCAGACCTACCAGATCCGTACGGCCAACACCAGCAGCATGACTCCTGGGATGGTGATGGCCTCCTCTCCCGCCTTGTCTGGCCAGGAAGGCCCAGAGGTTGTCGTCACCCGTAAGAGGGAGGTCAGACTGATGAAGAACAGggaagCGGCCCGGGAGTGTCGCCGGAAGAAGAAGGAGTACGTCAAGTGTCTGGAGAACCGTGTGGCCGTCCTGGAGAACCAAAACAAAACCCTCATTGAGGAACTGAAGTCACTTAAAGACTTGTACTGCCACAAATCAGagtagtgcccccccccccccatgtacaGAGACTCACCACAGAGCCATGCATCTGgcaccaccctccctcccccattTATCCCTTTCTTTTTAAAAAGCTCTACCAGTCTATAAGACCTACAGAAAGAggaaaaataacaacacaatttCTCCACTTTTTCAcaagtatccctttaaaaggaTGACATGAGTACCCCTAAAAAGGATGGCCTCATAGGTACCCCTTAAAAGGATGATGAGTACTTTCCATCATGAGTACCCCTAAAAGGATGAGGTGGAGCACACTGTTTCTCCACCAATAGAATGGAGCCCCTAGTGGAATCTTACAGTGGTAGGTATCGTGTCTATCCACGACACCACTGCTGCTAACTAACCAGTAGTCCCCAGTCTCAAGATGTCAGATACCAGGAAAACACCAGCCGTGGAGGACTAGGACCCCTCTGCCCACCATGAACTACCCTATACAACTATTGAGTTTGGACCGTCACCTGGCAACACACGTTGAAAATGATTTTGGAAAAATGGTCATCTTTTTGAGTGCTACACTATTCAGTATTTAGGCTGATGATTGCTTTAACTCTTCTGTTACTTACTAACACTTTATGTGGACTGTAGATCCCAACCACTGTCAGATGAAATGTATTATCTTTGAGCTTGAGTTGGGTTATCATGTATTGAATTTTTCTGCTTGCCAACTTTTGTTATTCAGCATTGCTAAGTCGGGTGTTTTGGGGTAGGAGATGGATTGTGGGTGGATTGTCTGCATCAACTAACAGGCATTAAAAGGTAACctcagcgatatgacgtagatgcagaatgtaaacagcatagtgggtcaatttccacaaCTAAGAGTGTTGAAGCGAGAAGCTCAACTCCGCTGTTTTGGTGCCGTGGCTACCACTACAACGTGAAGCGCTACTGTGTGATGGCAAAGTGttgcatctcgctcatctcaatatctccgGTGCTGCTCGGGGGGAAAGTCATTTCGCTGAGTACCTTTTTAAAGAGTTGTGCTAATGTAAACTGAGCTACCACACAGCTGACAGGAGGAATTGTGAAATATGACTGAAGGGTAGACTATGGGTGTTGTATAGTGTGCTTTTAGGCATTCATGTAATGTATACGATGtctgaggcagtgtgtgtgtttgagtctcCTTGTTTGTTTCTCCATGGCCTGAACAGGCATAAGGCATAATCATATTGGAGGATATCCTAACTTCCACTTAATCATGCATTGACATCAATGGGATTGTAGAGTGAAAGTTAGGATTAGCCCCACAATCTCACTTTTTCATCTGTTGTGCCTCAAAACACTTCTGATAGAACAAGGGAAGaagcatttttttttatcatgtaGTTCGTTAAAAGGGATAGTTTGCTTGGATCTGCAGTGATGACGTAGACCCATCGCTGACATTTAGACTGACAACTCGGTCAACAAACGTGGGATTTACACCAGGGGTGCGTTCAGCAGCTCACAACACTGTGGAACAGATCCAAATGTTCAGCTAGAACTGTTTTGTAGAACAGACATGCCTTTCTGACATGTAAAAGAAGGATTCATGTCAACTATATTTCTATCGGCAAAGTTCCAGAACATTTGCTTACTGAACCCGGTCTTCTGTTTGATTGGATAACGGAATGCCATATTGTATTATTTAGTTTTTACGTAGCCATCTGTCATAAATAACATATGCATCTTATTTTTAAAACACTTGCCATTTCTGTTCATATTTTGTAAACGTTGTATTTCTTAATGTCAGCATTCACTTGTATGAAAAAAGCAAAACAATTATATTACAGATTCTACTATTTGTTTTTGGCAGCTGTTAATAAATGTGTTTCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735261 lncRNA downstream 32264 10116004 ~ 10116747 (-) True G1516026
TU1735259 lncRNA downstream 35791 10112935 ~ 10113220 (-) True G1516024
TU1735258 lncRNA downstream 36172 10112613 ~ 10112839 (-) True G1516023
TU1735237 lncRNA downstream 43671 10102978 ~ 10105340 (-) True LOC110497040
TU1735223 lncRNA downstream 111073 10033422 ~ 10037938 (-) True G1515993
TU1735274 lncRNA upstream 664 10159169 ~ 10159388 (-) True G1516038
TU1735284 lncRNA upstream 7599 10166104 ~ 10166492 (-) True G1516046
TU1735275 lncRNA upstream 9521 10168026 ~ 10168732 (-) False G1516039
TU1735276 lncRNA upstream 9722 10168227 ~ 10168977 (-) False G1516039
TU1735277 lncRNA upstream 9722 10168227 ~ 10168732 (-) True G1516039
XR_005037367.1 mRNA downstream 2166 10138344 ~ 10146845 (-) True LOC110497041
XM_036951769.1 mRNA downstream 2173 10138344 ~ 10146838 (-) False LOC110497041
XM_036951767.1 mRNA downstream 31239 10074275 ~ 10117772 (-) False LOC110497040
XM_036951765.1 mRNA downstream 91592 10000040 ~ 10057419 (-) False LOC110514354
XM_036951774.1 mRNA upstream 16986 10175491 ~ 10229881 (-) False LOC110516308
XM_036951776.1 mRNA upstream 216266 10374771 ~ 10387072 (-) False LOC110527275
XM_036951777.1 mRNA upstream 216266 10374771 ~ 10387073 (-) True LOC110527275
XR_005037370.1 mRNA upstream 1030287 11188792 ~ 11194773 (-) False LOC118941093
XM_036951794.1 mRNA upstream 1037592 11196097 ~ 11204430 (-) True LOC110495606
TU1735073 other downstream 383786 9761473 ~ 9765225 (-) True G1515880
TU1734564 other downstream 655129 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 669793 9478676 ~ 9479218 (-) True G1515456
TU1734435 other downstream 725430 9422569 ~ 9423581 (-) True LOC110495568
TU1734456 other downstream 755403 9392696 ~ 9393608 (-) True LOC118941087
TU1735278 other upstream 16354 10174859 ~ 10195515 (-) True LOC110516308
TU1735300 other upstream 51813 10210318 ~ 10210833 (-) True G1516062
TU1735349 other upstream 100320 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 695064 10853569 ~ 10856314 (-) True G1516562
TU1736140 other upstream 889900 11048405 ~ 11048928 (-) True G1516757

Expression Profile