RNA id: TCONS_00047744


Basic Information

Item Value
RNA id TCONS_00047744
length 837
RNA type mRNA
GC content 0.39
exon number 8
gene id XLOC_024060
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 20089986 ~ 20099773 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCCTTGAGGGTCTTTGGAGAAACAGATTTTGACTAGTGATTTGCCATTCACTTAGAAGTTCACAATGTCTGAGTCccagagacccaaatctaaaatttcagcatccaggaggttgtttttAAAGACAAAGCTCCTGAAGAAAGCATGTGCTATGCTTGTAACTGAAAAAGAAGATAagcaaacagagagagagaacacCTTGGCTGAAAGAGTCCCACCTCTGCAATTGTCCGGTCTGTCAGTTCAAGACCTTcagGCTCTCTGCAGAGACCTTCATCAGAAGATTGATGTTGTAGATGAAGAGAGGTACGACATCGCAGCCAAGGTGTCCAAAAATGAAAAAGAGATCACTGATTTGAACATCAAGATTACCGAACTCAGAGGTAAAATGAAGAGACCAGCGCTGAAGAGAGTGAAGATCTCTGCTGATGCTATGCTGGGTGCTCTATTGGGCTCCAAGGTCAAAGAGTCTGTGGATTTCAAAGCCAACCTTAAGACAGTCAAGAAAGAAGAGGAGAAGAAAGAAGAGGTGACCGACTGGCGTAAGAATGTAGAGGCCATGTCTGGAATGGAGGGCAGGAAGAAACTGTTTGATGCTGGACAATAAAAGGATCTGAAATAAGAAGATCTGACAGCAGaacaaaatgtctttaaaataatgtataaatcaTTGCAAGTTCATAAAACgcataataacaaatattttaataagagCTCAAGATCTTGTTTACTTTCGATTTGAGAGAAATTGCAGGTTTTAAAAGCTATTTAGAAAGAGAATAAAATCTTACTTAATGTGCTGCTAAATGATTCATGTGATCTTTTTTCtgtctt

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-81 Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of troponin complex. Is expressed in cephalic musculature; pectoral fin; somite; and trunk musculature.

Ensembl:

ensembl_id ENSDART00000184073

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049040 lncRNA upstream 91848 19987079 ~ 19998226 (+) True XLOC_024057
TCONS_00049039 lncRNA upstream 92534 19987079 ~ 19997540 (+) False XLOC_024057
TCONS_00049226 lncRNA upstream 102687 19987068 ~ 19987387 (+) False XLOC_024057
TCONS_00047734 lncRNA upstream 206544 19870872 ~ 19883530 (+) False XLOC_024054
TCONS_00047728 lncRNA upstream 350109 19734160 ~ 19739965 (+) False XLOC_024051
TCONS_00049229 lncRNA downstream 6774 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00049228 lncRNA downstream 6774 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00049227 lncRNA downstream 6774 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00049230 lncRNA downstream 6833 20103324 ~ 20109429 (+) True XLOC_024061
TCONS_00047760 lncRNA downstream 619735 20716226 ~ 20716965 (+) True XLOC_024069
TCONS_00047741 mRNA upstream 2150 20077225 ~ 20087924 (+) False XLOC_024059
TCONS_00047742 mRNA upstream 2544 20081553 ~ 20087530 (+) True XLOC_024059
TCONS_00047740 mRNA upstream 86546 19999623 ~ 20003528 (+) True XLOC_024058
TCONS_00047738 mRNA upstream 131796 19954576 ~ 19958278 (+) False XLOC_024056
TCONS_00047739 mRNA upstream 132998 19955598 ~ 19957076 (+) True XLOC_024056
TCONS_00047748 mRNA downstream 19916 20116407 ~ 20125875 (+) False XLOC_024062
TCONS_00047747 mRNA downstream 19916 20116407 ~ 20125875 (+) False XLOC_024062
TCONS_00047749 mRNA downstream 22975 20119466 ~ 20127087 (+) True XLOC_024062
TCONS_00047750 mRNA downstream 44435 20140926 ~ 20211831 (+) False XLOC_024063
TCONS_00047751 mRNA downstream 92278 20188769 ~ 20211678 (+) True XLOC_024063
TCONS_00047732 other upstream 315399 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047707 other upstream 597454 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047695 other upstream 978266 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047675 other upstream 1601068 18482906 ~ 18489006 (+) True XLOC_024022
TCONS_00047672 other upstream 1992213 18097747 ~ 18097861 (+) True XLOC_024017
TCONS_00047755 other downstream 495992 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047756 other downstream 507405 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047785 other downstream 2129311 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047798 other downstream 2490805 22587296 ~ 22594781 (+) False XLOC_024094
TCONS_00047805 other downstream 2633916 22730407 ~ 22849186 (+) False XLOC_024096

Expression Profile

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