RNA id: XM_036951777.1


Basic Information

Item Value
RNA id XM_036951777.1
length 2140
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110527275
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10374771 ~ 10387073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTTAACCAACGATTTACCACTGATTTATGGATGGCTCCACGACTTGGGTGTCGCTCCTGTCCCCAGTTAAAATAGCCAACTGGCGTGAACAATGGCTTCGGTTGGAGCATGCATATTCATTTGATGAATCAGTTATTGCAAAGGACAATGAGACGGAAGAATTAGCGCATCAATACACAGAAGAAGAGAACACGAGTGAGAAGTTAGGTTACTGCCGCGTCTCTTCGGTGCAGTCCATAATAAGAAGCTATGGCACTAGACTGTACATCGCTGACAAAACTAACCCTTGTTTTATGTGTGGCGGCCCGTGGCTTTCCCCCAGTGAGCGGCTGCAGCGATGCCTACGGGAGGGCCATTCCACCACTTAGCAGCTGCAGCGGTGCCTACGGGAGGGCCATCTCTGACTTCTGTGTGACCAAGTTCACTCTGGACATGAAGGCCCTGGACCAGAGCCTGTGGTGCAGCTGGTCCGACACTTTTCAGCCTTACGAGGAACTGACCAACTGCACCTATTTTGTGGCACTCAAGATGCACTGCTTCTGGCCCAACCAGCAGATAGACGAACTCTTCATACGCCTTCACCGGGACTACTTTCACGACTGCGCTCTGACCGGCAGGCTGCTTCGGGACCCTCCTATACGTATCTTGGGGCCTTTCATTGGAGTGCCTGTGCTGGTCACTCTGCTCATGACTGCCCTAGTGGTGTGGAGCGGTAAATGCTGCCAGGGAATCGTGTAACTGTCTCATCCTGGGTGAAGGTGCCCCTGGGTACGgaatacagatctaggatcagtttgccCTGCCAAAATTCTAAACTGAATCATTAGCGGTGGAAACGCAAAACTGACTTCTAGGGATCAACCTGACCTCTTGGAGAACGAACTCCAGCTTATCTGATAGGGGAGACATGATGGAGGGGACACTGAACTGGGGCAAACGACAAGCAGAGATACCCAACAGCATACTAAGACTGTAATCTTTCTGTGATGTTTGTTGTTTGATGGACACTGGTGGTATGAGTGAAGGACCACTCAGAAGCCTACTACTGAAACAAAGCAAAGGCTATTTAAGATTGTGCTGTGGCTCATCAATAACCCTAGAAATTCCAATTGAAAACATGCATTGTATTGTTGTAAACCACAAAGTGGCCAACCAAGAGAGGGCTAATGTTGTGTAGGGCACGGAGGACAGATAGTAAATACCTCGTATGTCAAAATCAATGCAACAACATCTGTAATGTAGCTTTGGGCACCAGCCAAGTCTTTATATGAACTGAATAGATGTATATAAAGGGCTTCACAGAAAAGGCTGTATTTGATCTAGACAGCCACGCCCAGTAGCCACGCCCAGTAGCCACGCCCAGTTGCCATGACCAGTAGCCACGCCCAGTAGCCATGCCCAGTAGCCACGCCCAGTAGCCACGCCCAGTTGCCACGCCCAGTAGCCATGCCCAGTAGCCACGCCCAGTAGCCATGCCCAGTAGCCACGCCCAGTAGCCACGCCCAGTAGCCACGCCCAGTAGCCACACCCAGTAGCCATTCCCAGTAGCCACGCCTTTTAAACACAACAAAACaggaattatcttcatcagaatatgttgttttatattctaCCGTTTCACAATGGATTACAGAGCCATTACCACTGCATGTCTGATTATTCATTCATTATTATCTATTCATGTGCATTCTAAACAGAGAAATAAACAACTACAAATACTAATATGATAAAAGTGAACTAagaaattgtttttggtatccaTTTATTTTGATATCAATATGATATTTGTTTGATATCCAAACATGAATGAGAACAGAATTGAACTCCGACCTGAGGAGTGTAGAGATGCCCCTTCAGCCCACAGCCAGAACCAATATCTCTCTTCCCAGCACTGAGTGTCATACTACCatccacctactaccatatctaTCAGATTCAGGAGTCAGAGTACTCCAAcatcccaatacacacacacctgtgtagagaggtatcaaaaatacattacaATATGAACCATTCAAAAACAACCGGCTATTGTCATACTGTGGTGGGCAGAAGAAgaaggcaaacacacacacacacacgcacgcacgacacacacacacgcacacgcgcacacacacgcacgcacacgcacg

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735501 lncRNA downstream 1579 10367553 ~ 10373192 (-) True G1516232
TU1735407 lncRNA downstream 36107 10338299 ~ 10338664 (-) True G1516147
TU1735406 lncRNA downstream 37743 10336798 ~ 10337028 (-) True G1516146
TU1735363 lncRNA downstream 91406 10283020 ~ 10283365 (-) True G1516121
TU1735362 lncRNA downstream 93326 10280916 ~ 10281445 (-) True G1516120
TU1735522 lncRNA upstream 38194 10425267 ~ 10425742 (-) True G1516249
TU1735526 lncRNA upstream 45300 10432373 ~ 10432614 (-) True G1516253
TU1735528 lncRNA upstream 52739 10439812 ~ 10440026 (-) True G1516255
TU1735529 lncRNA upstream 53160 10440233 ~ 10440566 (-) True G1516256
TU1735530 lncRNA upstream 56199 10443272 ~ 10443500 (-) True G1516257
XM_036951774.1 mRNA downstream 144890 10175491 ~ 10229881 (-) False LOC110516308
XM_036951772.1 mRNA downstream 216265 10149011 ~ 10158506 (-) False LOC110495586
XM_036951770.1 mRNA downstream 216266 10149011 ~ 10158505 (-) False LOC110495586
XM_036951771.1 mRNA downstream 216266 10149011 ~ 10158505 (-) False LOC110495586
XR_005037367.1 mRNA downstream 227926 10138344 ~ 10146845 (-) True LOC110497041
XR_005037370.1 mRNA upstream 801719 11188792 ~ 11194773 (-) False LOC118941093
XM_036951794.1 mRNA upstream 809024 11196097 ~ 11204430 (-) True LOC110495606
XM_036951408.1 mRNA upstream 824246 11211319 ~ 11212299 (-) True LOC110527288
XM_036951819.1 mRNA upstream 831946 11219019 ~ 11271822 (-) False LOC110495607
XM_036951818.1 mRNA upstream 837424 11224497 ~ 11227809 (-) False LOC110495607
TU1735349 other downstream 114779 10258825 ~ 10259992 (-) False G1516107
TU1735300 other downstream 163938 10210318 ~ 10210833 (-) True G1516062
TU1735278 other downstream 179256 10174859 ~ 10195515 (-) True LOC110516308
TU1735073 other downstream 609546 9761473 ~ 9765225 (-) True G1515880
TU1734564 other downstream 880889 9488570 ~ 9493882 (-) True LOC110495556
TU1735899 other upstream 466496 10853569 ~ 10856314 (-) True G1516562
TU1736140 other upstream 661332 11048405 ~ 11048928 (-) True G1516757
TU1736155 other upstream 702156 11089229 ~ 11092444 (-) True G1516771
TU1736174 other upstream 780548 11167621 ~ 11174483 (-) False G1516784
TU1737190 other upstream 1221963 11609036 ~ 11745913 (-) True LOC110528752

Expression Profile