RNA id: XM_036951807.1


Basic Information

Item Value
RNA id XM_036951807.1
length 3521
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110495607
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11219019 ~ 11272018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACGGGACGCATATGTTTCCTAAAGGCCACTTCAGTGGTGAACTAGAAAGTGAAAGCCGTTCTCATATGGTTTGGTTGTGGAATAGAGAGACAATCTTAAAGTAGTGGGTTTCTGTCCTGAATGGATTTTCTGTCTGCTGTTTCTCAGTTGAAGGCTGAGGCGAGACTGGCAGCGAAGCGGGCGGCCAGAGCAGAGGCACGGGAGATACGCATGAAGGAACTGGAGAGACAGCAGAaagagATCTCAGACGATGAGGAACGGATGTCGGTGGGGAGCCGAGGAAGCCTTAGGAGAAACTTCTCATCTGATCTGTACTGCAGCTCCAACAGTCTCCCCTCACTCAGACATCAAAATTCCACTCAAAATGGCCGGCCCTCCATGCTCTTTATTGATGGCCCACGCACCCAGAGTCACAGGGGCTCTGTGTGTGACGAGGCTGTGCAGAGTAGCACACGGCGCTTTAGTGGCTCCATCTCTCGCGGTCCTTCAGACTACAGTGGTTTTCTGGGCTCCAACTCTCGGGCCTCGTCCAGGGCCAGCTCTGCCCGTGCCAGCCCAGTGGTGGAGGAGAGATCAGACAGGGACTTCCTGGAAAAGGGTTCCAGGACTGCCTCTACCCTCTCAGCAGCCACTCTAGCATCGCTGGGAGGGCCCTCCTCTCGCAGAGGCAGCTGTGACACCTCTATCTCAGTAGAGACAGAGGCCTCCATTCGAGAGATAAAGGACTCCCTGGTGGAGTCTGAGGAGAAGTACCGTAAGGCCATGGTGTCCAACGCCCAGCTACACAACGAGAAGTCCAACCTCATGTACCAGGTGGACACGCTGAAGGACTCGCTCATTGAGCTGGAGGAGCAGCTGTACGAGTCTAAACGAGAGTACAACGACAAGGCCAAGGAGTTTGAGAGGGAGAGGCACGCCCACAGTGTTCTGCAGCGCCAGTTTAACGAGATGAGAGAGACGCTGAAACAGAGTGAAGAACTGTTAACCGAGGTGGGCCAGCTCCGTCTCAAACGGGACAGCTGTGTTAGGGAGATCTCCGACCTGCAGGAGACCCTCGGATGGAAGGAGAAAAAGATTGGGGCCTTAGAGAGGCAGAGGGAATTCTCAGACGCCGGCGTGCGGGATGAGCGGGATAAGCTCAGGGATCAGGTGGTCCACCTCAAAGACACTCTGAAGAAACATGGGATAGTGCTGTCACCTGAAGTAACCACCAATGGGGATGCAGGACAGATGATTGATGGGCCTTGCAGTGCAGACTCTACCTCCCGATTGGCTCAGGAGTCCCAGCCATCTCATGGTGGGGAGAGCATGCTTGGCGAAGCACCAGAGATGCAGTTGGACCATGGCGAGGTGAGGACACCAGGGGGAGGCAGACTTCTACATGAGGCTGACAACTACTCACATGACCAGGAGAGGGCACTACTGGAGATAGAATCTTCGGACAAGTTGAACCAAGACAAGTTGAGTGACAGCCTGCAGCAACAAACAGACACTGAAGCAGAGCAGTCCAAGTACTGTGACCAAGAGACCCAGGTGGATGTTGCTGTACCTGAAGAAGCCATTTTGGTGCATTTTGGTGACAAAGAGACTCAGATTGAATATGAAGTAGAGAAACCCCAATACTGCGACACAGAAACTCTGGTGGAACCTGCTGAACTTGAAGGAGCCATTTTGGTTCAAAAGGAATATACAGATGGTGGCAGTGACAATGGAGAGGGGTTGAATCAAAGAGGATTTGAACCAGAATCCCAGGAACAGGCAGAGAATGAGGAAAACAGTGGAGAAAGTAACAAGGAAGCTGTACCAGTAAGCGGTGGCACTGACGGACAATGTGAGGAAATCACAAACCTTGAGAAAGGACGGGAAAACACAGAGCTTCTCACAGCTGTGTCTACTGAAGAACAGGACATCTCTGGTCCAACTCTCTGTGATGAGACAGAGGCGACTCTTAGTCAAATCCAAAGTGAATCTCAAAGTGACCTGCAAGGAGAGAACACCCAGGAGTATGATCCTGGGACTAAAGGTCAAGTCATTCCAGAAAACTCAAGGATCACGGAATCTGAGATGATTAAGATGATTCTGAGGATTTCTGTATGTCTAGGGGAGGCAAAGACCAGCCCAAATCAGATCTCTCAGGGATCATTAAAGAAAACAGAAACAATAGGGATGGAGATGAAGAATAATCCAGGGCATCCTGCAGAGCATCAGGCAGAGACTGGCCAAGTAACATCTACTGGAACATCTGCTATctcatctacagtctctattgaaCTGTTTATCTCTGAATGTCCTGACGAGGTTGGAATCAAGACAGATCCACTCATAATAAACACTTTAAGTGAATTTGAGAAAGATAAACAGAATTCTCTAGAACTTCAGCAACATAAGAATGATCATTTCAGTACAGAAAGCTCTGTGGAAACTGTGCCAAAGATCACAGACTCTGACGGACAGAAATTATCTGAGAGGGTTGAAGAGCTGGAGTCGAGTTCAGTGGAGAGCAAGCCAGATCAGATTTGGCAGGAATCTGTATGTGGCATGAAGGAAGATGAACCAAATACTAAAGAGCTTCAGGCAAAGGAGCCCCCATCCACTATCTCTGACAAAACGGTTACACCTATCATAACAGAGGAGGGGAAGACTAGACTAGACCAACAGGTGATCCCTGATTTACCAGAGAGGCTAGAGACCAGCTTAGAAAATACCTTACCAGGAGTTCAAGGTGATCAGAAGATGGATGTAGCAGAATCAAGGGAGAAACAAGGATGTACCTGTAAATGTATATGTAAACAATCCCAGAGTGATCAAGTACTGACGGAGAACTCACTGGATGTAGCTCTAACTCAGAGGATCAGCGACTCTAGTGGAGAGGTTATCTCAGACAGGACAGAGGAGGTAGAGCCCAGCCCAGACAGGATCCAATCAGAACCACCCAGtcgtgtagagagagaagaatggtGCATCATTGAGGAGAACATCTATGAGGAGAATCTCCAGCAGGAAGCCATTCAGGAGGAGCAACAGACAGAACAGGGGGAGGCTTCAACAAGTTCACCAGCAGGGGGAGACAATGAGTTAAACGATGGGGCCTCCGCTGGACATatagacagttgtgaagaagcCGTTCTACTTGTGAAAGAGGAGGAAACCTATCTACCTGTAGAAGAAGAGCACATCAGCTCCTCACCCAGACCCTCGGCACTTGGCCAAGAGATACAGCCATTACCCGAGgcggtggaggaggggagagagcgcCCCCCAGTGGAAGAAGCCCAGAAACAGGAGAGCGGTGTAAGAAAGGGACAAAGGGGCAATAGGAAGGGCAAGGGCAAAGATCCTTGCAAAGTAAACTAGTTGATGATCACTCTACTCTCAAAGTGTTATTTGATGTGTAATAGACTACTGACTGGGGTTGCAGCCAGTCTCTGTGGGTTTCTTTGTTTTACTCAAAGgaattacatgttttatttaatgacTTATTTAGTGCCTTGAATAAATGGACCATGTTGAAGAGCGAtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736256 lncRNA downstream 7077 11217195 ~ 11217420 (-) True G1516832
TU1736253 lncRNA downstream 11463 11212664 ~ 11213034 (-) True G1516829
TU1736241 lncRNA downstream 35219 11185131 ~ 11189278 (-) False LOC118941093
TU1736243 lncRNA downstream 35219 11185131 ~ 11189278 (-) True LOC118941093
TU1736171 lncRNA downstream 50014 11169749 ~ 11174483 (-) True G1516784
TU1736283 lncRNA upstream 49819 11303815 ~ 11304102 (-) True G1516857
TU1736324 lncRNA upstream 72223 11326219 ~ 11327380 (-) False G1516887
TU1736327 lncRNA upstream 72223 11326219 ~ 11327380 (-) True G1516887
TU1736341 lncRNA upstream 85612 11339608 ~ 11339920 (-) True G1516897
TU1736342 lncRNA upstream 86038 11340034 ~ 11340247 (-) True G1516898
XM_036951408.1 mRNA downstream 12198 11211319 ~ 11212299 (-) True LOC110527288
XM_036951794.1 mRNA downstream 20067 11196097 ~ 11204430 (-) True LOC110495606
XR_005037370.1 mRNA downstream 29724 11188792 ~ 11194773 (-) False LOC118941093
XM_036951777.1 mRNA downstream 837424 10374771 ~ 10387073 (-) True LOC110527275
XM_036951776.1 mRNA downstream 837425 10374771 ~ 10387072 (-) False LOC110527275
XM_036951820.1 mRNA upstream 20899 11274895 ~ 11299017 (-) False LOC110495612
XM_036951821.1 mRNA upstream 20899 11274895 ~ 11299017 (-) False LOC110495612
XM_036951822.1 mRNA upstream 20899 11274895 ~ 11299017 (-) True LOC110495612
NM_001197213.1 mRNA upstream 51251 11305247 ~ 11307037 (-) True LOC100505417
XM_036951828.1 mRNA upstream 101681 11355677 ~ 11363249 (-) True LOC118941094
TU1736174 other downstream 50014 11167621 ~ 11174483 (-) False G1516784
TU1736155 other downstream 132053 11089229 ~ 11092444 (-) True G1516771
TU1736140 other downstream 175569 11048405 ~ 11048928 (-) True G1516757
TU1735899 other downstream 368183 10853569 ~ 10856314 (-) True G1516562
TU1735349 other downstream 964505 10258825 ~ 10259992 (-) False G1516107
TU1737190 other upstream 355040 11609036 ~ 11745913 (-) True LOC110528752
TU1737459 other upstream 685134 11939130 ~ 11945939 (-) False LOC110527304
TU1737456 other upstream 687378 11941374 ~ 11943081 (-) False LOC110527304
TU1737445 other upstream 690900 11944896 ~ 11972320 (-) False LOC110527304
TU1737466 other upstream 693569 11947565 ~ 11948345 (-) True G1517784

Expression Profile