RNA id: XM_036951820.1


Basic Information

Item Value
RNA id XM_036951820.1
length 2815
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110495612
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11274895 ~ 11299017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGAGCATGTGATGAACAACCGACTTCTTCAGGCCGTTCGCAAATGTGTTGCCTCAACTCCAGGGAATTAACAACTGACCTCACAGCTGTCTGCTCTGCGCCGGGCGTAAAGGGACCATCTCTGTGTTGCTGTAGAGTACTGGTTCATATTCTCCAAAACCATGGACCTGACCGCGCTTTCAGACGACGAGGCCAAGCACGTCTGGGAGGTCATACAGAGAGACTTCACCCTCAGGaagatagaagaagagagactgGGgGACCTAAAGACTAAGATAGAGAAGGAGGACACTAAGATTGAGCTGCTGGGTACTCAGACCACCCTGGTAGACTCTCACTGTATCCGCTGTCTGCAGCCCTTCAAGTTCCTGGTCAACAGTAAGCGTCAGTGCATAGACTGTAAGATGTACACCTGCAAGGCATGCAGCCGCTACAACAAGAAGGATCACGGCTGGGTGTGCGACCCCTGTCGTATGACAAGGGTCCTGAAAATTGGAACAGTGGGATGGTACCATGACAATGTGCGCACCCGTTTCAAGCGCTTCGGCAGTGCCAAGGTGATGAAGTCTCTTTACAAGCGACTCAACGGAGAGGGCGCCCGGCGTGACAGTGACACACAAAGCATGCCTGATTTCCGCAaCGACAGGTACAATGGTCATGATGAGGACTATGCAGATGCAGAAGCTCAGCGATACAAAATGATGCGAAAGAACAAGCGCCTGCTCTCTGTTCATCCCATGGACTTGGATGTGGATATAGAAGAGTATTTTCCACCCCACTCTCGCACTCACTCTCGTCGACAATCCTACCAGCAGATCCAGGAGGAGCGAGGTGGTGGTCACCGGGGTGACATGGAGTTCATGGATTCCATGCAGCAACAACAACACCGCATGAACCGTAGGAAGAGCCTGGATAGGTACAACATGCGCCCTGACGATGGGCAGTATGGGATGGTGCGTGCCCGCTCCCTATCCAAGATCAGCTCCTCTATGAACCGCCAGCACTATGTGGATacgtcagaagaggaggagggagggcgcAACACCATGTACCAGACCCCCTATCGCCGACGCCCTTCCTACAGCCGAGTTGGCTCTCACGAGAACCTGCAGGCCCCAACACAGCAACCGGTCAATGCGCTAAACAAGCGTATGTCAGCCATAGAGAGTCTCCTGAACCGGCTGGAGTCCAAGATGACTCTACCCCCCGACGATGAAGCGACGTCCCCGACCGCTGCACAGATAGAGGAGGAGAAGCTGAGGAGGAAGCTGAGCGAGCTGGCGGGGAACATCAGTGTTCCGTCCTCCGACGAGGAAGCAGGAGGGGGGAAGAAAACCCCTTTATTAAAGAGGGCCGCTGTGAAGAGTAACCTCCCAGTCCTCCCCCTAGAGCCCCTCAGTTCTTCCAGCGACGAGGGGCCCACCGAGGCTCAGCAGAGATCCACCGCGGCGGCCCTCTGTGACATCACCAAAGAGTTTCTCAGAACCATTAATGCCGCTGAAAGCGCGATGAACGAGTACTTCCCCTCAATAACGTCTAATGACAGCCCCATGATAACTGACGTGGCTGACGTAAGGAAAGCAGCTGAGTCTTACAGGGAACTTGAGGAAAATGTGTACATGACCTCAGGGAAGTCCTTTGACCTGGAGAAGAAGCTGAGGCATCTGGAGCAGAGTGCCAAGAACCGCTTCGGAGGGGCCACAGACTCGGAGCTGTCTGACCTGGAGGACGTGGTGGCTCTGACTGCACATCGGGTCCAGAGCACTGAGAGTGAGGTGTCTGATTTGGAGAACAAACTTGCTGCTCTAAGTGCCTCAGGGAAGAAAAAGATATCAGGTTCACAGAACAGGAAAAGGTTTCCCCAAGACTTCCCCACAAAACCCAGCAACGGCTCAGGATCCCTACGGAAATCCAATCACATGTAAAAGGACTGTACGACGAATAAGCCCAATGAAACTGTCTGTATTATCTTAGTTACTGAAATATACCTTCAACCTTATCTGTCACTGATCCACTGTGTATCTGATGTCAATCTCATATCCACATTGTTACAGTATGTTAATGGTATATCCACACCCACAATGCACAGCAGTTATGTGCTGTAAAAGCAGGCTACACCATAGCTATGTTCAATGCAAAAACAACCCTGGTTTACTGCCTGAAAGTCATACGCATTCTAAAGTATCCTCTCAGTCTCAATGTATCTGATGTCTAAACTCATGAAATgctctgatgtgattggtcaaaagggCAATGTGtggggaaaaaatatcagaattgggcttccTGCTGCAAAACAGTCTAAGTTTCCTGATTTAAAAGATGAATCTGTGCCATATAGGCTACCAACATTCCAGCAGAGGCCAAATGTGACTTTCTGTGTTAAAATGGAGTTTGATTAGTGAACACTGGTAGTTTCTGTACACTATCATGACCTCGTCTAATAATTACCTTTTGGGTTGCATGGGATTCTGGGAAACAAGCAACACGACTTACTATCTTACATCACCAACTGTGTTACATTCAAATAACAGAGTGTCTGTTACATATTGTCGTAGTACATATCTTTCTGAAAAAGTGAAATGTTGTCTTGACACTGACCAGACAAATATGATATGAAATAACAAGTTATCAGGTCTGGATAATGATCTCTGTTTTCTCTCAATTCATATCAAAAAATATGTCTGAAACCGTTTTCAAGACAATTATAAATATTGCAGTAggatgaatatatatatactgtatcatttgAAAAGCTGCAGTGCGTTGTGCTGTCACTGGGCTTCTGCATCTAATAAATTGTATCACATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736257 lncRNA downstream 35298 11238935 ~ 11239597 (-) True G1516833
TU1736256 lncRNA downstream 57475 11217195 ~ 11217420 (-) True G1516832
TU1736253 lncRNA downstream 61861 11212664 ~ 11213034 (-) True G1516829
TU1736241 lncRNA downstream 85617 11185131 ~ 11189278 (-) False LOC118941093
TU1736243 lncRNA downstream 85617 11185131 ~ 11189278 (-) True LOC118941093
TU1736283 lncRNA upstream 4798 11303815 ~ 11304102 (-) True G1516857
TU1736324 lncRNA upstream 27202 11326219 ~ 11327380 (-) False G1516887
TU1736327 lncRNA upstream 27202 11326219 ~ 11327380 (-) True G1516887
TU1736341 lncRNA upstream 40591 11339608 ~ 11339920 (-) True G1516897
TU1736342 lncRNA upstream 41017 11340034 ~ 11340247 (-) True G1516898
XM_036951808.1 mRNA downstream 2877 11224497 ~ 11272018 (-) True LOC110495607
XM_036951803.1 mRNA downstream 2880 11224497 ~ 11272015 (-) False LOC110495607
XM_036951796.1 mRNA downstream 3011 11224497 ~ 11271884 (-) False LOC110495607
XM_036951797.1 mRNA downstream 3011 11224497 ~ 11271884 (-) False LOC110495607
XM_036951800.1 mRNA downstream 3012 11224497 ~ 11271883 (-) False LOC110495607
NM_001197213.1 mRNA upstream 6230 11305247 ~ 11307037 (-) True LOC100505417
XM_036951828.1 mRNA upstream 56660 11355677 ~ 11363249 (-) True LOC118941094
XM_036951830.1 mRNA upstream 164455 11463472 ~ 11683349 (-) False LOC110528752
XM_036951833.1 mRNA upstream 164455 11463472 ~ 11683349 (-) False LOC110528752
XR_005037373.1 mRNA upstream 164455 11463472 ~ 11683349 (-) False LOC110528752
TU1736174 other downstream 100412 11167621 ~ 11174483 (-) False G1516784
TU1736155 other downstream 182451 11089229 ~ 11092444 (-) True G1516771
TU1736140 other downstream 225967 11048405 ~ 11048928 (-) True G1516757
TU1735899 other downstream 418581 10853569 ~ 10856314 (-) True G1516562
TU1735349 other downstream 1014903 10258825 ~ 10259992 (-) False G1516107
TU1737190 other upstream 310019 11609036 ~ 11745913 (-) True LOC110528752
TU1737459 other upstream 640113 11939130 ~ 11945939 (-) False LOC110527304
TU1737456 other upstream 642357 11941374 ~ 11943081 (-) False LOC110527304
TU1737445 other upstream 645879 11944896 ~ 11972320 (-) False LOC110527304
TU1737466 other upstream 648548 11947565 ~ 11948345 (-) True G1517784

Expression Profile