RNA id: XM_036951831.1


Basic Information

Item Value
RNA id XM_036951831.1
length 9251
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110528752
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11463472 ~ 11746107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTTGCTGGATGATCCGTGTCCCTCTTGAGTGTGaagtgaggagagaggtggagggggaaaAGGATATGGGACCGTGGCTACGTTTCCTCGCGTTCTCATGATAACCGTGTGTGAGTGAGGGATTGGGGAAGCTTGGTTTTGGCTATAAATTCCCCCATTTCAATCACAATCGGACACTGGGGTTGAAAACAAAACCACTAAATCAATGTTCCTAAGGCAAGCTGGCTTCGCTGCGGGAGATGCGCGCGAACACAATGGGAGACAACACACTCACTTCGCTTGGAGGAATACAGCGATGTAATAATATTACTCTACAATAATGGGAATACTGTCGTGGTGGATCTTGAAGCAATACACCCGGAAACTCTGCTGCCTGAACCagtaatatttgttttgtttgcTGTGACAACAAATTACTCTGTAAGCGACTGCAGTCTCGTAAAGAACCGTGGGCATTTTTTTGCACAAGCGATGCAttttgagagggagagaagccgGACATGCCCTAAATGAAGACGCGGTGCTTGTTTAGTTCCTACATTACATTTGTTGCCAGTTTTATAAATCCACCGGGATGTGAAAGGAATTCATTTCCTGCGTCGAATTCTCATGCCCTTTTGCACATCTGGATAAGTAAATTGTTTTGATATTTAATATTAATTTAGTAGTGTAACTAATTTAATATAGTACGCGTTTAATTATAGTATTATTACAAATAGCCTACTATTACTTCCTTATTACTAGACGACATCAAAGGACCAGTGTCTGTAAGTAATTTTTCCATTCAAAGTAACGTCTGTCCCACTCGTGTAGCCTATTCCGTAGCTCCCAGTTCAGTTCGTGTCCCTAGAGAATGTACCTTCTTGACGGTAATATAGAAAGGATGGAGCGAGGAACGCCACAAAGGAAAACAGTGTACCGGATCTCTCTCACCTTGGTAAAGAAAGAGAgcttggaggaggaggatggggttAGCTGCGGGAGCTCTGGACCACGACGTCTCGAGAACACCAACGTGGGCGCTTACCGTCGCGAGGTCTCCTCGGAGCTCCAGAGGAGTTGTCTGCTGGAGGAGCTGAAAGAAGTTGAGGATGAAAGCGACGAGTTCCACTCACACAACTACATGAGAAATTTCAGGACATTCAGCACCGGACAATTAGAACTGGGAAGGCTTAAAATGAAAAAGGTGCATCAGTTGCATAAAGAGTTGAAGGAAACTAGCCCCTCCACAGAGCCTGGTAACAACAGCCAGGCCTCAGAGGAGACCATGTCACCGCAGAGTCAGAAGAAATCACAGGGGATAAGCTGGACACAGGAAAGCGCTGAAACTGACTCGAGGCTTAAGGGGGATATTTGCACGGAGACTGAAAAAACCTTGACAACATCTGCTTCCTACGGTGAGAATGGGAGTGTTGATCAGAAGAAAAGACTTCTGAAAGCCAAGAGCACAGAGGACAAGGGCAGTGATGCTCCAACTAATGGGGACGGGGGTAAGGACAAGTCGTGTGCGTCCAAAAGTAACGGAAGAGCCGTCAAGGCCTCTCCCGAGACGCCGCCACTGAAGAGCCACCCCAGCCTGCTTCGCCGCAGCTTCAGTTTCCGCCACTGGACGGGTGGAGAACTGCTCCGCATCCGGACCCTCTCCAAAGACCAGCACCACAGCAGCTCTGGGTGTGTCGGCCGCGGGGAAGGAACAGCCGGGGACGACAACCAGACCCCCCAGtccacagtcctccagaacccggCTTACGATGAGACGGGACCTCCTAAACGAAACACGTTAGAAGTCGGGGCTGTCCTTAACAAGACTGACTCAATGACGGAGCTGAGCCGCTGGGAACGAGCGAGAGGCAAAAACCGCACATTGGACAACAGCGATCTGATCACTCTTTCCATGAAGAGTGTGTCAGAGAAGGAGGGGTTTCTGAGAGGCACCGGCTGCCGCTCCAGTGGCTCGGACCGGCGGCTGGTCAGGTTCTTCAGCGGTATCTTCTccaggaaggatggagggatggtgtcTACCTCCACTCCGGTGGGCAGCCCCAGCACTAACCGCTCCCTCAGGAAGGGGAAGAGGAGCGGCCCCATGGCCTACTCCCAGTCCAGCACAGAGAGTGTTAACGGAGGAGGCGGCCTGTCGTCAGAGGACGCCTTTGTGAACAGCCAGGAGTGGACCCTGAGCCGATCGGTACCAGAACTCAAAGTGGGCATTGTGGGTAACCTGGCCAGTGGGAAGTCTGCGCTGGTTCACAGGTACCTGACAGGAACATACGTCCAGGAGGAATCTCCAGAAGCTGACGTGGATGCAGGGGGCCGTTTTAAGAAGGAGATAGTGGTGGACGGACAGAGCAACCTACTGCTCATCAGAGATGAAGGGGGCCCCCCAGAGGCTCAGtttGCCCTGTGGGTGGATGCAGTGATATTTGTGTTCAGTCTGGAGGATGAGATCAGTTTCCAGACAGTCTACCATTACTACAGCCGCATGGCTAACTACCGAAACACTGCTGAGGTACCTCTGGTGTTGGTGGGGACgcaagATGCTATCAGCTCAGCCAATCCCCGGGTCATCGATGACACGCGAGCACGCAAGCTGTCCAATGACCTGAAGCGCTGCACCTACTATGAGACGTGTGCCACCTACGGCCTCAATGTCGAACGGGTCTTCCAGGACGTGGCCCAGAAGATCGTGGCGACCAGGAAGAAGCAGCAGCTGTCCATTGGTCCGTGCAAGTCCCTCCCCAACTCCCCTAGCCACTCCTCTGTGTGTTCTGCACAGGTGGCAGCAGCAGTTCACATCAGCCAGACCAGTAATGGCGGCAGCCTGAGTGACTACTCCTCGTCAGTCCCCTCCACCCCCAGCACCAGTCAGAAGGAGCTACGCATCGACGTCCCCCAGACCACCAACACCCCCACGCCCGTCCGCAAGCAGTCCAAACGCCGCTCCAACCTCTTTACTTCTCGGAAGGCCAGCGAGCCAGACAGGGACAAGAAAGGACTGGAGGGCCGAGCGGACAGCATTGGAAGCGGCCGTGCTATTCCAATTAAGCAGGGCATGCTTCTGAAGAGGAGTGGCAAGACCCTAAACAAGGAGTGGAAAAAGAAGTATGTGACGTTGTGTGACAATGGCCTGCTCACATATCACCCCAGCCTGCACgACTACATGCAGAACGTCCATGGGAAGGAGATAGATCTGTTGAGGACCACAGTGAAGGTCCCAGGGAAGAGGCCTCCCCGAGCGGTGTCTACCTGTGCCGCTGTCCCCAGCCCGAAGACAAACGGCCTGGCCAAGGACATGAGCAGTCTGCAGCTGGGACCTGGTGGCCCtgGCTCTGTCACCAGTAGTTTGTCAGCCTCTCAGATGGCCAGTGGGATCAGCTTGGTGTCCTTTAACAGTCGTGGGGACGGCATGCACCAGAGATCCTACTCAGTCTCCTCCGCCGACCAATGGAGCGAGGCCACCGTCATCGCCAACTCAGGAGTCAGCACAGaCACGGGTCTGGGAGAGTCTGTGTGCTCCAGCCCCTCCATCTCCAACACCACCAGCCCTAAGATGGACCCGCCCCCCTCGCCGCACGCCAACCGCAAGAAGCACCGCCGGAAGAAGAGCACCAGCAACTTCAAAGCCGACGGCCTCTCTGGTACTGGGGAAGAACAAGAGGAGAACTTTGAGTTGACCATTGTGTCTTTGACGGGCCAGACGTGGCACTTTGAGGCCACCTCGTACGAGGAGAGAGACGCCTGGGTCCAGGCCATCGAGAGCCAAATCCTAGCCAGCCTGCAGTCCTGTGAGAGCAGCAAGGCCAAGTCACGTCTGACCAGCCAGTCTGAGGCCATGGCCTTACAGAATGTGAGGAGCCTAAGAGGGAACTCTCGCTGTGTGGACTGTGAGGCCCAGAACCCCGACTGGGCCAGTCTCAACCTGGGAGCATTGATCTGTATCGAGTGTTCAGGGATCCACAGGAACCTGGGGACCCACCTATCTCGTGTTCGGTCCCTGGACCTGGATGAGTGGCCCCTGGAGCTCCTCAAGGTCATGACCTCTATAGGCAACGAGCTGGCCAATGACGTGTGGGAGGGCAACGCACAGGGACGCCTCAAACCAGCACCCGACGCCACCAGGGAGGAGCGTGAGCGTTGGATCCGAGCTAAGTACGAGCAGCGGTTGTTCCTGGCGTCGCTCTCGGGGGTGGACCTATCCCTGGGCCAGCAGCTGCTGAGGGCCACGGCCGAGGAGGACCTGCGCTGCGTCATCCTGCTTCTGGCTCACGGCTCCCGGGAGCAAGTCAACGAGACGTGTGGAGAGGGAGACGGACGCACCGCCCTTCACCTGGCGTGCCGCAAGGGCAACGTGGTCATCACACAGCTCCTCatctggtacGGGGTGGATCTGATGGCGAGGGACGCCCACGGTAACAGCGCGCTGGCTTATGCACGGCAGGCCAGCAGCCAGGAGTGTGTTGACACGCTGCTGCAGTACGGCTGTCCCGATGAACGCTACCCACTTATGGCCACGCCCAACCTGTCCCGACGCAACACCAACCGCAACAACAGCTGCAGCAGCACGGGCAGCACCGCACTCATATAAACACTACTGCCCCCTTCAGGAGGCCTCTGGGTACTGCGGCTCGCAGGATATTAACAGGCTAAACACACATTGTGACATTATATGCATATTACACACTCAAAATCCTGACTGAAAAAAAACTGTGACATTTTTGGAAGTGAGGGGCTTGGAGAGAGTCTGAATTGGGAGAAAATGACTGAACTCTTTTGGGAACCACTACTTCTGCACTCCTTGTCTTAGTGCACTCATTGACCTCTTACCCTCTCCACTCTGACACTAATCTCACACAGAAGACACTAGCACTCCTGTTGCCGTTGATGAAGCCCTCTGTCCTTTTGGCTCTCTGCCCCACATCATGATGACCCCCTCCCCCGCGTGCTTCGGTCCAATTATCAATTTCCTCACAAGGCCCTCCCCTGTAAAAGCATGGGGACAGGAGGTGGCTTGGCATTACTTCCGGGTGGAGTCAGGTCACCGGCTTCCCCCACTGCTATCTACCTGGCTGCATGtggccctaagcatgatgggacatGGGGAGGAGGTGGCCAAAATCACGTGAAAAGCAGCGACTCCCCCTTCTCATATACCCTCTATTGACTCCCCCTTCTCATATACCCTCTATTGACTCCGATCTGCATCTGCTCCCAGCTTCAAcccaggccacacacacactatatcactACTATGTCACTGCTTTCTCAGCTGTACAGAAACAGAGGCCTGCGGGTTTGGAAAGACGTTGGATGTTTGAAGAAGGCCTCTGTAGCATGTTGTGGAAGGGGGGGTTGCTTTTCACTTAAGTTATGGGAGCTCTACCTTGTAACATGAGAACTACAAAGAACTACAAAGAACACTGATCAACTGAACAGAACTCCTCTTCTACTCTGGTTCTTCTTTAGTTCTCCACATAATCAGtgtttcccctctcttctcttcagtAAATTATGTGATCTCTTTCTCCTgtggatgtttattttttattttttaatgtggAACAAAAATATCTTCTTGTATAAACAGTTTAAGAAAGTGAGAGAAGAAAATCCTAAATATCGGATATTCCTTGGAAGTAAAACAGAAAGTGTGATAGCATGACAGACACTTTCtcttttcaattaaaaaaaaggTTGTTCATCCCGTCCACATTGTGTTTATCTCGTTGTGAATTACTGGACCAATGAATCAGTTCTACAGAGAAGTGAGTTTGTCATTTCTATTAGAAGCCACTTGCTAGGTGTAAAAAGCGTGTATGTATTTCCAGGCTCAGGGACCAGAGACGGTCAATTCTATGTGATCTTGAAACCCCCACAATTCCACTCGCCTCAACAACAGTCTTAGATTTACATTTCATCCGTTCAGAGGAACAGTCCACCTCCAGAATGTACAGGAAGCATCGTGATGCTCAGCATCAGACCATCAGCCTTCTTCAGGATCATCGTACGGTTGGTCCACCACACAGAGACCAGGGGAaagtgttttctgtttagtgttttatccTTCTGCATATTATTCTGCCTTTTCTTTACTTTATCAGGTCCTCATATACACTGTATCTGCTGTTTCAGCTGGAAACGCATCGTGATAATGTCTTGTTGCATAGGGACCGGCAGAGGATGGGAGGAAACGGATCGTGATAATGTCTTGTTGCATAGGGACCGGCAGAGGATGGGAGGAAACGCATCGTGATAATGTCTTGTTGCATAGGGACCGGCAGAGGATGGGAGGAAACGCATCGTGATAATGTCTTGTTGCATAGGGACCGGCAGAGGATGGGAGGAAACGCATCGTGAAAATGTCTTGTTGCATAGGGACCGGCAGAGGATGGGAGGAAACGCATCGTGATAATGTCTTGTTGCATAGGGACCGGCAGAGGATGGGAGGAAACGCATCGTGATAATGTCTTGTTGCATAGGGACCGGCAGAGGATGGGAGGAAACGCATCGTGATAATGTCTTGTTGCATAGGGACCGGCAGAGGATGGGAGGAAACGCATCGTGATAATGTCTTGTTGCATAGGGATCGGCAGAGGATGGGAGGAAACGCATCGTGATAATGTCTTGTTGCATAGGGATCGGCAGAGGATGGGAGGAAATGGATAGGCAGGACTCTGTCATGTTCCTGTTGATTACTTAGGTGTGGTGCAGGTATCAGTTGTCAGGTCCATACTCCCGTTCACTAACACTGATCTACAACTGATCCAGGAACAGCATCCACGGTGTAAATGTAGCACTATTTATACTAGATGGGCTCATCAGTGTTCAATCTATTTCATTTAATCTAAGAAGACGTTTGTCTGACAGTTCGATCCATGATGGGCTGTCAGCTTTTGTAGAATATCTACGATCTGATGGATACTGTTTCTTCATAGAATTAGACTGTTCTGATTCGGAGAAGAGTTCCTAATTTGTGCCCCCTCTGAGTTTTCCCCTTGTCAAGTTGACTGACATCATATATGACGTCATAGGTCAGGATAGACTCTGGGCCGCCTCCCATCAGGTCTTCTGAGGTACTTGGCATGcgtttcctccctcctctctctgtcattggATACCCATGTCTGTTGCTCCCCAACCAATCATACAGTCTCTGCCTCTAGAATCTCTTCGTCTGCGtcctgaatggcaccctattcccttgaacagtgcactacttttgacccgtgCCCATAGGATTCTGGTTAAAAgaagttcactatgtagggaataggcagctatttgggatgcatcctttcTGCTCAGTGACTCGATAGGAAGGGCTTCTCTGCGTCTGGAATCCTACTGTGTGTAAATAATATtttacttctctctcttcctctatcgcttttctttctctctttttgaaAAGCTCTTTTGGTGGTGATGTCATGATGTATCTGAAGGAAGTAGGAAGTTCTTTACTCTGAGAGCGTCGTGTTCTCTCTGCGGTTTGAGTGGAGGTTTGCCGATGCCCATGTGGTGTTTTTATTGGGAGAAATAAGCCAGTGATGGGTTGACTGAACGTTGCTGGAATGTTTAACATCAGGGGctttcctttcctcctgtccCTCTTCGTGTTGCCAACGTCTCTGCTCTGCACACGTCCCTTTGCCTGTTCTTAaaccttactgtgtgtgtgtcctcgtgTGTGATATGAGTCTTTCTCCCCACAAACCATTCCTAAGCGTCAAATGCTCCCGTATTTATGATTGCTTTTGCCCTTGAtgttaccttgtgtgtgtgtgtgtgtgtgtatatatatataaacgccTAATATAAGTAGTGACTCCTGCCTCACCTGTACAGGTATTAAAGCAATATGGAGGACAGGTATAGATGTCCATGCTAACGTGTGTTAGGTGTTTCTGTTTAACACACACCTTGCAATACCTGCGTATGCTGTAGACAAGCCCATACATCACACACACGCTTCTCTGCGTCCGATAGAAATGTGAAAAGAGCTAAACATGTTGAGTGTGATTAACATGAGAAGTGCTGAGGCATCAGGCTTTGTCCACAGGCAGCCACGAACACTAAAGTACACCTGACCAAACCTTTATTGAACATTATTGAACCTTATTGAACCTTATTGTTGCAGTAGCAGAAATAGCTCCATCGTCACTAGAGGGATTTCTCCAACTTAATAACACTTGTGAGGTTTTGACTGAGGAGGAGACCAAGTCGTGTTATTTCTGACAAAACGATGCACTACGTATCCAGTTTGATGCTCTCGTCAGCCCTCTCCTCTCAAAGTCTTTCCTGTAGAACACTTTTGCATGGATGGATGTTTGTGTAGATCCCTGGTCTCTTCCCTCATATTGTCTGCTGGCCTGAAACTGTTCCTATCTCAGCCACTGGCTCTCACACTAGTGGGAGATATGAAGAGGTTAGACATCGTATTGGACACAATCCTCATTGGTGGTCAAGctgctctcccttccccctctgaaGTAGCCAGTGGAAGTCATTATTAGCCAATAGTGTGAGCTGTCCTCCCTTATAGTTGGGTTCAGGAAGCATCAAAAAGCTAGCCTGGAATCCAGAAGATTGGTTTCAATGGTGAAACGGAGCATATCAGTTTGGTTTCCAGGCTGTCTAGAATCTCCTCTTTAGACGTGAGACGTTGAGACATGTATCAGTGTCCCTGCCAGGGAGAAGAGCACTATGGGGGACACACTCACCATGTCAATCAGTCTGGTGTTACTTACGTACCATTAAACCAGCCACAGCTCTCCCTTCTATACATGCCAGTCGACACATCAGCACAGCGTTCACCACATGTACATAGATGTAATCAACAAACCGTAATAAACAAACTATggtcatttgtttttgtttatttggttCCCGTGTGTATTTGGTGACCTCTTTGTCGTTGCTCATTCATCCTGTATGTAGCTACACAACCCAACCCGAGACGACTGCCAGTCAAATTATTTAATAGGGTTCTAATGCGATCTAGATATGGAAGAAGACCCCTCTCCTCCTAACTGCTTGGGTTCAGTTATCAGTCTAGTCCATCCACCTCTATTGTGACCTATCAGCATCAAGCAGCGTTATTATTCCAATTGTCATTGATCTTctaattattattgttattattattgttctaTTGAGTTTGTGTCatctgtacagtactgtgttgATACCTAATACAGTCTTCTACTGTAATGTGTCTCTTTTCAATAAAGACAAAATATGCTTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737205 lncRNA downstream 39646 11423483 ~ 11423826 (-) True G1517586
TU1737149 lncRNA downstream 109049 11353430 ~ 11354423 (-) False G1517553
TU1737150 lncRNA downstream 109049 11353430 ~ 11354423 (-) False G1517553
TU1737143 lncRNA downstream 109049 11353448 ~ 11354423 (-) True G1517553
TU1736353 lncRNA downstream 112379 11350564 ~ 11351093 (-) True G1516909
TU1737338 lncRNA upstream 28240 11711591 ~ 11712204 (-) True G1517703
TU1737346 lncRNA upstream 32939 11716290 ~ 11720498 (-) True G1517708
TU1737379 lncRNA upstream 91814 11775165 ~ 11777825 (-) True G1517724
TU1737392 lncRNA upstream 169605 11852956 ~ 11853274 (-) True G1517737
TU1737398 lncRNA upstream 178019 11861370 ~ 11861937 (-) True G1517741
XM_036951828.1 mRNA downstream 100223 11355677 ~ 11363249 (-) True LOC118941094
NM_001197213.1 mRNA downstream 156435 11305247 ~ 11307037 (-) True LOC100505417
XM_036951820.1 mRNA downstream 164455 11274895 ~ 11299017 (-) False LOC110495612
XM_021570964.2 mRNA upstream 63310 11746661 ~ 11748608 (-) True LOC110495629
XM_036951840.1 mRNA upstream 97588 11780939 ~ 11791227 (-) False LOC110497052
XM_036951838.1 mRNA upstream 97588 11780939 ~ 11791228 (-) False LOC110497052
XM_036951839.1 mRNA upstream 97588 11780939 ~ 11791229 (-) False LOC110497052
XM_036951837.1 mRNA upstream 97588 11780939 ~ 11791230 (-) True LOC110497052
TU1736174 other downstream 288989 11167621 ~ 11174483 (-) False G1516784
TU1736155 other downstream 371028 11089229 ~ 11092444 (-) True G1516771
TU1736140 other downstream 414544 11048405 ~ 11048928 (-) True G1516757
TU1735899 other downstream 607158 10853569 ~ 10856314 (-) True G1516562
TU1735349 other downstream 1203480 10258825 ~ 10259992 (-) False G1516107
TU1737459 other upstream 255779 11939130 ~ 11945939 (-) False LOC110527304
TU1737456 other upstream 258023 11941374 ~ 11943081 (-) False LOC110527304
TU1737445 other upstream 261545 11944896 ~ 11972320 (-) False LOC110527304
TU1737466 other upstream 264214 11947565 ~ 11948345 (-) True G1517784
TU1737532 other upstream 337421 12020772 ~ 12022440 (-) False G1517822

Expression Profile