RNA id: XM_036951846.1


Basic Information

Item Value
RNA id XM_036951846.1
length 1788
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110495626
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11814290 ~ 11817266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAATGTCCCCTTCCTGCTGAAGAGAATGCGGAAGCAAGAATAGGACCAAATGGGAAAGGGCATTTTCATCTGTTTCTAGTCACAGACCCGGGTGAAATCCAACAAATCTACAACATTTTAACTGTGGTCCTGCTACATTCCGCTCGCTGTTTACAAGCTATCATCAATAGTAGATATCAATAGGTGGTGGAAATGGAGCGCAGAGACGCATCGTCCACTAACGCAGACTGGATGTCTCAACTGCCAGAGGAACTGTGGGGTACACCGCTTTGGGACCTGGCGATACCCGGGAGTCATGACAGCATGAGTTACTGCCTGGATACACACTCTCCTGTCTTGGGGTCTGAGTCGTTTATGCTGCAGTTTCTGGATCGACTGGCACCCTGCATTGTACGCCCCTGTGTCTACCGCTGGGCCACCACACAGGCGTGGTGTATTCCTGATCAGTTGGATGCTGGAATCCGGTTCTTCGATCTACGGATCGCTcataaaaacataaaaaatacatTCAACACACAAGACATGTtaaaaacacacaacacagatgACACGCTGTATTTTGCACACGCGATTTATACGCTACAGACTGTAAAGgaggccCTGTCAACCATGGCTGTGTGGTTGGAGCAGCACCAGAAGGAGGTAGTGATCCTGTCCTGTTCCCACTTCTACCTGCTGACGGACTCTGAGCACCAGGCCCTGGTCTGCTACATCACTCAGCTGTTTAAAGACAAACTCTGCCCCCCACAGgagACTCCCTATCTGAGCCAGTGCTGGGATCTGGGGCAGCAGGTCATAATTTCGTACGACGATGAGACGATTCTTCACCAACACAAGCAACTGTGGCCTAAGATCCCTTACTGGTACGCTGACTCGGCAGACCCCAAAGAGGTCATTTCTTACCTGGAGGAGCGGCAGAAGGCCCAAGGAAGAGcagCTCATTTCTTCACCTCTGGGCTGAACCTGACGGAGGACACTGCTGTGGTGGTCTGCAACCCCTGTCTGACGATGAGGAAGTTAACGATGAAGAGTTTCTCCCTGCTGCTGGACTGGGTGGAGAAGCAGACTCCTGGACCGAACCAGACCGCTGTCAACATCATCTGTGGAGACTTTGTGGGTCTGAACCACTTTGCCTCTGTGGTTATCGGGCTCAATAAGAAACTGCTGAAGACAGAGAGCCACAGATGACTCACAAGGGACggaatgagaaagagacagataaaCATGCACAGAATCCCAAATGGCTTCTAGCTCCTTCTCCCTATGCagttgtggagatctgagaggttTGGTTAGGTGTAATCAACATGGTACTCTGACACACCTGATCTagtgtgtcaaactcattccatggagggcctactGTCTGTAGGttttttggtttttcctttcatttagacctagacaaccaggtgaggggagttccttgctAATTTGGGAGGAgcaaaaacccacagacactcggccctccgtggaatgagtttgacacgtgcacTACTAGATCAtaggaatgagtttgacacgtgcacTACTAGATCAtaggaatgagtttgacacgtgcacTACTAGATCATAGGAATGAGTTCCCATGTTTCCCTATGTCTACCTACAGCACAGGGTGGCAGGTTTACTGTGTTGATAATGAGTATGATGGATACAATGAAAGGTTTTTGCATTCTAAAGTAATGCCACAGGAAAAGTTTCATCAGATGGAcaatataatttattttttatatgcAAATACACTACATGCAGGGGCAAATACATAAATGTCTATTGAACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737379 lncRNA downstream 36465 11775165 ~ 11777825 (-) True G1517724
TU1737346 lncRNA downstream 93792 11716290 ~ 11720498 (-) True G1517708
TU1737338 lncRNA downstream 102086 11711591 ~ 11712204 (-) True G1517703
TU1737323 lncRNA downstream 152664 11660768 ~ 11661626 (-) True G1517690
TU1737308 lncRNA downstream 179318 11633615 ~ 11634972 (-) True G1517677
TU1737392 lncRNA upstream 35690 11852956 ~ 11853274 (-) True G1517737
TU1737398 lncRNA upstream 44104 11861370 ~ 11861937 (-) True G1517741
TU1737463 lncRNA upstream 122801 11940067 ~ 11945939 (-) False LOC110527304
TU1737454 lncRNA upstream 127630 11944896 ~ 11945939 (-) False LOC110527304
TU1737455 lncRNA upstream 127710 11944976 ~ 11945939 (-) False LOC110527304
XM_036951837.1 mRNA downstream 23060 11780939 ~ 11791230 (-) True LOC110497052
XM_036951839.1 mRNA downstream 23061 11780939 ~ 11791229 (-) False LOC110497052
XM_036951838.1 mRNA downstream 23062 11780939 ~ 11791228 (-) False LOC110497052
XM_036951840.1 mRNA downstream 23063 11780939 ~ 11791227 (-) False LOC110497052
XM_021570964.2 mRNA downstream 65682 11746661 ~ 11748608 (-) True LOC110495629
XM_036951850.1 mRNA upstream 78 11817344 ~ 11821519 (-) False LOC110519912
XM_036951848.1 mRNA upstream 78 11817344 ~ 11822607 (-) False LOC110519912
XM_036951849.1 mRNA upstream 78 11817344 ~ 11822607 (-) True LOC110519912
XM_036951845.1 mRNA upstream 5612 11822878 ~ 11834736 (-) True LOC110495617
XM_036951853.1 mRNA upstream 21257 11838523 ~ 11857115 (-) True LOC110495627
TU1737190 other downstream 68377 11609036 ~ 11745913 (-) True LOC110528752
TU1736174 other downstream 639807 11167621 ~ 11174483 (-) False G1516784
TU1736155 other downstream 721846 11089229 ~ 11092444 (-) True G1516771
TU1736140 other downstream 765362 11048405 ~ 11048928 (-) True G1516757
TU1735899 other downstream 957976 10853569 ~ 10856314 (-) True G1516562
TU1737459 other upstream 121864 11939130 ~ 11945939 (-) False LOC110527304
TU1737456 other upstream 124108 11941374 ~ 11943081 (-) False LOC110527304
TU1737445 other upstream 127630 11944896 ~ 11972320 (-) False LOC110527304
TU1737466 other upstream 130299 11947565 ~ 11948345 (-) True G1517784
TU1737532 other upstream 203506 12020772 ~ 12022440 (-) False G1517822

Expression Profile