RNA id: XM_036951845.1


Basic Information

Item Value
RNA id XM_036951845.1
length 3796
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110495617
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11822878 ~ 11834736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taggaatgccttgaagatcgacCAGACCACTGGTGTAGAGTTTTGATTTTTGCTTTGCCTACCAAATTAAGAGCTAAACCAAAGATTGACCACCATTCGTCGTTTCAaatgggaacaaatgagtcatagtgggcagaacaagcaaggagatGGGCAGAGCAAAGCACGACCTAGCGAGATCCTATTTGCGCATGTAGCATACATTTGCATATTTACGTTAGGGAACCAAATTCGCCTTTGCACTCCTTTTAAACAATGCCATTTTTTTCTCAACTTtagcaaagggtaaagtctacaaaacgtaGTCCACTATGTTCGTAACAGAttatagttttgggaacagaacactgtattgagatcaaatgtttatcGATGAGAAAACTTGCAGAATTTCGtccaaaatccatctcgttccaGCTTCTCCCACTGCCGGACAGTGGCTTCCTACTCACTACCATAtttgagtggaaacgccaaccggatgcttcacatttatacatccgatGAAATGTCTGTATAATTGTCAGTGGCTAAACACAAACTGCAGTCTCCAACCAGTTACTGGCGGTAATGAACGGGTTTCCTCCGCCGTCGTAAAGAGAATAAGAAAATCTGTCTGCTCTCGACCAAACGTCAGATGACAGGCGAATCTAAACAATAACAAATACACACCTTATGCCAGGGTTATAATTTACGGGGTGAAGGATGGCATTTATAACGGCAAACTGGAATCCGCTCGGGGAAGCGTTTTACAGgaaGATCGAGCTGTATGAGATGGGATGGAGCTTGAGAGATGGGCTCAAGGAATGTCTGGTGGCAGCAGCCCCATACGGGGGACCGAtcgcTCTTCTAAGGCAGCCACAGAGGCCTTCCTCCAGTGCACGGCCCCAGCTGGAGATCTATTCCTCCTCAGGCGCGAACATGGCCAGCTtcccgTGGAAGAGTGGCCCAGTGAGACAGCTGGGTTGGACAGTGTGTGATGACCTGCTGTGTATCCAGGAGGATGGCACTGTCCTCATCTACGACCTGTTTGGTGCCTTCAAAAGACACTTCAGCATGGGCAACGAGGTGGTTCAAAACCAGGTGCTGGAAGCCAAGGTGTTCCACTCACCCTATGGAACTGGTGTCGCCATAGTAACGGGAGCCTCACGCTTCACCCTGGCCACGAATATTGACGACCTGAAGCTGAGGAGACTCCCGGAAGTCCcagGCCTCCAGGGGGCACCCTCCTGCTGGGTAGTGCtgactcaggacagacagacCAAAGTGCTGCTGGCCAACGGAGTTGACCTCTACATACTGGACAACACATCCTGCACCCCTGTGacccCTCCTGGCCTCTCTCCACAGGCCTGTAGCATCGTGAACATGGCCGTGTCATTCAGCTATAAGTACCTGGCTCTGTTCACAGACTCTGGACACCTGTGGATGGGCTCAGCCAACCTCAAGGACAAGCTGAGTGAGGTGGACACCAAGGTGAGGACCCCGCCTAAACAGATGGTCTGGTGCAGAAGGCCAAAGAGCCAGCAGCCCTCTGTGGTCATCATGTGGGACAGGCTCCTACTGGTGGCCGGAGAGTGTACAGACACCATCCAATACACTCTGGatgaggagagtgtgtgtgtagcagagCTGGATGGAGTGAGGATCATAGGAGGGTCCAGGCATGAGCTGCTGCAGGAGGTGCCCTCGGCCTGCCAGGACATCTTTAAAATCGCCTCCATGGCTCCTGGAGCTTTACTACTGGAGGCACACAAGGAGTACGAGaagtcCAGTCAGAAGGCAGATGAGTACCTGAGAGAGATAAAGGAACAGAGTGTATTGGGGGAAGCGGTGAGAcagtgtgtggaggctgctgggtATGAACATGAACCAGAGACCCAGAAAACACTGCTCAGGgcTGCGTCTTTTGGGAAGTGTTTTCTCAGTAACTACCCACCAGAGCCGTTTGTCAGTATGTGTCGAGACCTGAAAGTTCTCAACTCTGTCCGAGAGTACACTGTGGGgatccccctcacacacacacagtacaaacaGATGACTGTTCAGGTCCTCATTGACAGGTTGGTGTACCGTAAGCTGTATCCCCTGGCCATTGAGATCTGTCGCTATCTGAAGACACCAGAGTACCAGGGAGTCAGCAGAGTTCTCAAACACTGGGCCTGCTGCAAGgtcCAGCAGAAAGAAGAGCCTGATGAGTCCATAGCACATGCTGTCAGTGTGAAGCTGGGCGAGGCAGCAGGAATCTCCTACTCTGAGATCGCTGCCAGAGCATATGAGTGTGGCAGGACGGAACTGGCCATCaagTTGTTGGAGTTTGAGCCTCGTTCTGGGGAGCAGGTCCCCCTTCTACTGAAGATGAAGAGGAGTCAACTGGCCCTGAGTAAAGCTATAGAGAGTGGAGACACAGACCTGGTTTACACGGTGGTGACATACCTGAAGAACGAGATGAACAGAGGAGACTTCTTCATGACGCTCAGAAACCAACCGGTAGCTCTGAGCCTCTACCGGCAGttctgTAAGCACCAGGAACAGGACACACTGAAGGATCTGTTCAACCAAGACGATGACCATCAGGAGCTGGGTAACTTCTACGTCAAGGCCAGTTACAAGGAGAAGAAGCTGGAGGCTCGCCTGTCTCTGCTGCAGAGTGCTGTGGACGAGTACAACAAGGCCAAGAACGAGTTTGCAGCTAAGgcgacagaggaggagatgaagCTGCTACGTTTCCAGAGGCGTCTGgatgaggagaagggagaggctcTGCTGGGCCTGTCTCTCCAGGAGACTCTGCATGCCCTCCTCACCTCCAACTTCCACAAGCAGGCTGAGCAGCTCTACAGGGACTTCAGGGTGCCAGACAAAAGGTACTGGTGGCTGAAGCTGACCGCTCTGGCAGAGAAGGATGATTGGGAAGAGATGGAGAAATTTGCCAAGAGCAAGAAGTCCCCCATCGGCTATCTAccctttgtggaggtgtgtgtgaaaCAACACAATAAGTACGAGGCCAAAAAGTATGTTTCCAAGGTGACCCCAGAGCAAAAGGTCAAAGCCCACCTGGCCATaggTGATCTGGAGGGGGCAGCCGAGGCAGCtatagagaggaggagtgaaggagagatcAGCACTGTCCTGTCCCGCTGTTCTCCCACCACAGACCGAGCCCTGCTGGAGAGACTCAACCGAGCCAGATCCACTGCTGCCAAAAAGTGACCTTCCTGAAATCCTATTCAAACCACAAAATATCTCACTGACAAAAAAGTGAGCCCTATCAAAAACGCACTAAGAACTGTTGCTGTTGAAAAGTGACCCATCAACCACCATTCACTTCAGCTCCAGCCTATGTCCTGCTTCAACTACGTttggaggggaaggagtgattTGGGAAAGAAAGacattccaacacacacacagcttagacAAGCTGATATCAACAGCACTCCCATACTATACCAATCATGAAAGAAATGTGCCTCTCGACTGTCTGTTTTAGCCAAGAGATGCAGTGAGATCATCTCAATTCGCAATGAATTGCATTCATATTGTATATCCTGTGTTTTCAAATCTGTTCAAATGAAGGAAGTGAGAGAAGTAGGGACACCACTTTTGACTATTGAGAAGCACAGATTGCTCCCATTTACTGTCTGCGGTAAGCTGCTTGTGTTACTGACTCTCCTCTCCAGATCATGTGATTGTCATATTAATGAAACCATGTTGGTGTTGTTCACACACTGCAGACCATTGTCTCATGTTGTATCATTGAATAAATGCATTCCTTTGTAAAGGAGCTACATAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20180 VPS16; vacuolar protein sorting-associated protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737379 lncRNA downstream 45053 11775165 ~ 11777825 (-) True G1517724
TU1737346 lncRNA downstream 102380 11716290 ~ 11720498 (-) True G1517708
TU1737338 lncRNA downstream 110674 11711591 ~ 11712204 (-) True G1517703
TU1737323 lncRNA downstream 161252 11660768 ~ 11661626 (-) True G1517690
TU1737308 lncRNA downstream 187906 11633615 ~ 11634972 (-) True G1517677
TU1737392 lncRNA upstream 18220 11852956 ~ 11853274 (-) True G1517737
TU1737398 lncRNA upstream 26634 11861370 ~ 11861937 (-) True G1517741
TU1737463 lncRNA upstream 105331 11940067 ~ 11945939 (-) False LOC110527304
TU1737454 lncRNA upstream 110160 11944896 ~ 11945939 (-) False LOC110527304
TU1737455 lncRNA upstream 110240 11944976 ~ 11945939 (-) False LOC110527304
XM_036951848.1 mRNA downstream 271 11817344 ~ 11822607 (-) False LOC110519912
XM_036951849.1 mRNA downstream 271 11817344 ~ 11822607 (-) True LOC110519912
XM_036951850.1 mRNA downstream 1359 11817344 ~ 11821519 (-) False LOC110519912
XM_036951846.1 mRNA downstream 5612 11814290 ~ 11817266 (-) False LOC110495626
XM_036951847.1 mRNA downstream 5612 11814290 ~ 11817266 (-) True LOC110495626
XM_036951853.1 mRNA upstream 3787 11838523 ~ 11857115 (-) True LOC110495627
XM_036951854.1 mRNA upstream 28181 11862917 ~ 11868870 (-) True LOC118941096
XM_036951863.1 mRNA upstream 42377 11877113 ~ 11898774 (-) True pjvk
XM_036951857.1 mRNA upstream 91738 11926474 ~ 11944163 (-) False LOC110527304
XM_036951860.1 mRNA upstream 93844 11928580 ~ 11972660 (-) False LOC110527304
TU1737190 other downstream 76965 11609036 ~ 11745913 (-) True LOC110528752
TU1736174 other downstream 648395 11167621 ~ 11174483 (-) False G1516784
TU1736155 other downstream 730434 11089229 ~ 11092444 (-) True G1516771
TU1736140 other downstream 773950 11048405 ~ 11048928 (-) True G1516757
TU1735899 other downstream 966564 10853569 ~ 10856314 (-) True G1516562
TU1737459 other upstream 104394 11939130 ~ 11945939 (-) False LOC110527304
TU1737456 other upstream 106638 11941374 ~ 11943081 (-) False LOC110527304
TU1737445 other upstream 110160 11944896 ~ 11972320 (-) False LOC110527304
TU1737466 other upstream 112829 11947565 ~ 11948345 (-) True G1517784
TU1737532 other upstream 186036 12020772 ~ 12022440 (-) False G1517822

Expression Profile