RNA id: XM_036951862.1


Basic Information

Item Value
RNA id XM_036951862.1
length 2749
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110527304
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11926474 ~ 11972660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGCTGGGGCTGTGCAATGCTGTAATCTACTGCTCTGTCTCAAGTTATTTAGAAAGGCTAGAAGTCTTCCCATGTTTTTTGAAATCACAAAAGTTATTTTTGCCAGAGAAAGAGATATTTGACTGCAATAGACTATCTTCTAATATCAAAGCATATGATCAGTTTCAGTTTTAATCCCAAGCGACTTTTTCATGATATAATGTTATGTGCGTGATCAATTTAAATGGAAAGCTGTTCAATTGCAGCGGAATAGCGGATTTTTAAATACTTGGGTTGACGTCACTAAACTTTTCAAGAAGCGGTGCGCGCCGTCCGCGTTTGTGAATAGAGACAGAACAGAACCGTGCGGGAACGAGAGAGAGCTGGGCGACAAGGAGACCGTACAAAACAAGGACTCTTTCACTTCATTCGgagagagggaactGATGAGTCAGAGGGGAGGATAGATGAGTGACAGACACTACTAGTGGGTTCCAGACACACAAATCCAAATCAAGAAGGCTCCTGATCCACTGCAGAGCCCAGGTCTCAGTACCACCATAGAAGCTATCGCAGTATGAACCGAGCTTTCAACCGGAGAAAAGATAAATCTGGAGGGATGACAGCCCCAGAGGCTTTGGCCAAGAATCACATAGTGTACAATGTCAAGTTCCTTGGCGTAACAGAGGTTGACCAACCAAAAGGCACAGATGTCATAAGGATAGCAGTGAGAAAGCTGAAGTTCCAAAGGCATATCAAGAAATCAGAGGGCCACAAAACACCGAAGGTGGAGCTGCAGGTGTCCATCTATGGAGTGAAATTATTAGACCCCAAGACCAGAGATGTACAGCACAACTGTCAGCTTCATAGGATATCCTTCTGCGCGGACGACAAAACCGACAAGAGGATATTCACCTTCATCTGCACAGAGCCAGAGACCAAAAAACACATCTGTTATGTGTTCGACAGTGAGAAATGTGCAGAGGAGATCACCGTCAGCATTGGGCGAGCATTTGACCTGGCGTACAGGAAGTTTCTGGAGTCTGGCGGGAAAGACGTGGAGATGAGGAAACAGATCGGCAGTCTGCAGAAGAGAATTCTGGAACTGGAAACTGAAAATTCCAAGTTGAAAGAACGACTTCAAGATCTAGAGGATCACATGGCAGATTGTCAAGGCTCACCGgcaTGGAGCACCATATCCAGGCGTCCCCCGACGGATGTTTTCGACATGGTTCCATTCTCCTCAGGGTCTCCTATGGCAAGGAAACCTGCCATCAAtgggtcctctcctcctcctccctccttttcccctcctccacctcctccacatgttttcctgagagagagagGAACAGATATTTTGGGGGTGGAGCCTTTTGACCCGTTCCTCTGCAACACGTCCTTTCCTCCTGACGTCCAATCTAAACTGGATGAAATGCAGGAGGGGTTCAATATGGGACTAACCCTGGAGGGCACCATCTTCTCTCTGGACCCAGTGGACAGTCGCTGCTGACCACACCGCAACCCTAACATGGACAGTTGAGGCTGACCACAACGCAACCCTAACATGGACAGTTGACGCTGACCACAACCCTAACATGGACAGTTGAGGCTGACCACAACGCAACCCTAACATGGACAGTTGACGCTGACCACAACCCAAACATGGACAGTTGATGCCGACCACAACGCAACCCAACATGGACAGTTGACGCTGACCACATCCCTAACATGGACAGTTGACGCTGACCACAACCCTAACATGGACAGTTGATGCCGACCACAACGCAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCTGACCACAACACAACCCTAACATGGACAGTTGACGCTGACCACAACCCTAACATGGACAGTTGATGCTGACCACAACACAACCCTAACATGGACAGTTGACGCTGACCACAACCCTAACATGGACAGTTGATGCTGACCACAACCCTAACATGGACAGTTGATGCTGACCACAACACAACCCTAACATGGACAGTTGACGCTGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACACAACCCTAACATGGACAGTTGATGCTGACCACAACACAACCCTAACATGGACAGTTGATGCTGACCACAACACAATCCTAACATGGACAGTTGATGCTGACCACAACACAACCCTAACATGGACAGTTGATGCTGACCACAACACAACCCTAACATGGACAGTTGACGCTGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACGCGGACAGTTGATGCTGACCACAACACAACCCTAACATGGACAGTTGATGCCGACCACAACGCAACCCTAACATGGACAGTTGATGCTGACCACAACGCATCCCTAACATGGACAGTTGATGCTGACCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737398 lncRNA downstream 78552 11861370 ~ 11861937 (-) True G1517741
TU1737392 lncRNA downstream 87215 11852956 ~ 11853274 (-) True G1517737
TU1737379 lncRNA downstream 162664 11775165 ~ 11777825 (-) True G1517724
TU1737346 lncRNA downstream 219991 11716290 ~ 11720498 (-) True G1517708
TU1737338 lncRNA downstream 228285 11711591 ~ 11712204 (-) True G1517703
TU1737488 lncRNA upstream 3264 11975921 ~ 11979272 (-) True G1517796
TU1737500 lncRNA upstream 21381 11994038 ~ 11995146 (-) True G1517807
TU1737533 lncRNA upstream 49519 12022176 ~ 12023228 (-) True G1517822
TU1737482 lncRNA upstream 70369 12043026 ~ 12043377 (-) True G1517793
TU1737561 lncRNA upstream 116025 12088682 ~ 12088909 (-) True G1517840
XM_036951863.1 mRNA downstream 41715 11877113 ~ 11898774 (-) True pjvk
XM_036951854.1 mRNA downstream 71619 11862917 ~ 11868870 (-) True LOC118941096
XM_036951853.1 mRNA downstream 83374 11838523 ~ 11857115 (-) True LOC110495627
XM_036951845.1 mRNA downstream 105753 11822878 ~ 11834736 (-) True LOC110495617
XM_036951849.1 mRNA downstream 117882 11817344 ~ 11822607 (-) True LOC110519912
XR_005037375.1 mRNA upstream 73370 12046027 ~ 12049827 (-) False LOC110527249
XR_005037376.1 mRNA upstream 73370 12046027 ~ 12049827 (-) True LOC110527249
XM_036951865.1 mRNA upstream 87615 12060272 ~ 12065637 (-) False LOC110518257
XM_036951866.1 mRNA upstream 87615 12060272 ~ 12065637 (-) False LOC110518257
XM_036951867.1 mRNA upstream 87615 12060272 ~ 12065637 (-) False LOC110518257
TU1737190 other downstream 194576 11609036 ~ 11745913 (-) True LOC110528752
TU1736174 other downstream 766006 11167621 ~ 11174483 (-) False G1516784
TU1736155 other downstream 848045 11089229 ~ 11092444 (-) True G1516771
TU1736140 other downstream 891561 11048405 ~ 11048928 (-) True G1516757
TU1735899 other downstream 1084175 10853569 ~ 10856314 (-) True G1516562
TU1737532 other upstream 48115 12020772 ~ 12022440 (-) False G1517822
TU1737534 other upstream 48115 12020772 ~ 12022440 (-) False G1517822
TU1737535 other upstream 48115 12020772 ~ 12022440 (-) False G1517822
TU1737536 other upstream 48115 12020772 ~ 12022440 (-) False G1517822
TU1737601 other upstream 267577 12240234 ~ 12245743 (-) False LOC110512633

Expression Profile