RNA id: TU1737459


Basic Information

Item Value
RNA id TU1737459
length 1970
RNA type TUCP
GC content 0.47
exon number 9
gene id LOC110527304
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11926474 ~ 11972660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCATAGGATATCCTTCTGCGCGGACGACAAAACCGACAAGAGGATATTCACCTTCATCTGCACAGAGCCAGAGACCAAAAAACACATCTGTTATGTGTTCGACAGTGAGAAATGTGCAGAGGAGATCACCGTCAGCATTGGGCGAGCATTTGACCTGGCGTACAGGAAGTTTCTGGAGTCTGGCGGGAAAGACGTGGAGATGAGGAAACAGATCGGCAGTCTGCAGAAGAGAATTCTGGAACTGGAAACTGAAAATTCCAAGTTGAAAGAACGACTTCAAGATCTAGAGGATCACATGGCAGATTGTCAAGGCTCACCGgcaTGGAGCACCATATCCAGGCGTCCCCCGACGGATGTTTTCGACATGGTTCCATTCTCCTCAGGGTCTCCTATGGCAAGGAAACCTGCCATCAAtgggtcctctcctcctcctccctccttttcccctcctccacctcctccacatgttttcctgagagagagagGAACAGATATTTTGGGGGTGGAGCCTTTTGACCCGTTCCTCTGCAACACGTCCTTTCCTCCTGACGTCCAATCTAAACTGGATGAAATGCAGGAGGGGTTCAATATGGGACTAACCCTGGAGGGCACCATCTTCTCTCTGGACCCAGTGGACAGTCGCTGCTGACCACACCGCAACCCTAACATGGACAGTTGAGGCTGACCACAACGCAACCCTAACATGGACAGTTGACGCTGACCACAACCCTAACATGGACAGTTGAGGCTGACCACAACGCAACCCTAACATGGACAGTTGATGCCGACCACAACGCAACCCTAACATGGACAGTTGATGCTGACCACAACACAACCCTAACATGGACAGTTGACGCTGACCACAACCCTAACATGGACAGTTGATGCTGACCACAACCCTAACATGGACAGTTGATGCTGACCACAACCCTAACATGGACAGTTGATGACCCCAATGCTTTCCTTTTTGTAGACAGAATTTAATTGGTAAAGAAGTATTTGTATAAAATCAACATTTCTGGGACtacagtgagggggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtttatttgaacagtaagagacagaataacaacaaaatccagaaaaataaattgatttacattttaatgagggaaataagtatttgaccccctctcaatcagaaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcacactcttaaagggagtgctcctaatctcagtttgttacctgtataaaagacacctgtccacagaagcaataaatcaatcagattccaaactctccaccgtggccaagaccaaagagctctccaagggtGTCAAGGCCAAGATTAAAGTAAAgaacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaagaactgtccatctccctcggcctggggctccatgcaagatctcacctcgtggagttgcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgtcaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgtcatgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatatacaggcccatctgaagttttccaatgaacatctgaatgattcagaggacaactgggtgaaagtgttgtggtcagatgagaccaaaatggagctctttggcatcaactcaactcactGTGgttggaggaggaatgctgcctatgaccccaagaacaccatcctcaccgtcaaacatggaggtggaaacattatgctttgggggtgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737398 lncRNA downstream 77193 11861370 ~ 11861937 (-) True G1517741
TU1737392 lncRNA downstream 85856 11852956 ~ 11853274 (-) True G1517737
TU1737379 lncRNA downstream 161305 11775165 ~ 11777825 (-) True G1517724
TU1737346 lncRNA downstream 218632 11716290 ~ 11720498 (-) True G1517708
TU1737338 lncRNA downstream 226926 11711591 ~ 11712204 (-) True G1517703
TU1737452 lncRNA upstream 255 11946194 ~ 11972320 (-) False LOC110527304
TU1737460 lncRNA upstream 255 11946194 ~ 11972320 (-) False LOC110527304
TU1737461 lncRNA upstream 255 11946194 ~ 11972412 (-) True LOC110527304
TU1737488 lncRNA upstream 29982 11975921 ~ 11979272 (-) True G1517796
TU1737500 lncRNA upstream 48099 11994038 ~ 11995146 (-) True G1517807
XM_036951863.1 mRNA downstream 40356 11877113 ~ 11898774 (-) True pjvk
XM_036951854.1 mRNA downstream 70260 11862917 ~ 11868870 (-) True LOC118941096
XM_036951853.1 mRNA downstream 82015 11838523 ~ 11857115 (-) True LOC110495627
XM_036951845.1 mRNA downstream 104394 11822878 ~ 11834736 (-) True LOC110495617
XM_036951848.1 mRNA downstream 116523 11817344 ~ 11822607 (-) False LOC110519912
XR_005037375.1 mRNA upstream 100088 12046027 ~ 12049827 (-) False LOC110527249
XR_005037376.1 mRNA upstream 100088 12046027 ~ 12049827 (-) True LOC110527249
XM_036951865.1 mRNA upstream 114333 12060272 ~ 12065637 (-) False LOC110518257
XM_036951866.1 mRNA upstream 114333 12060272 ~ 12065637 (-) False LOC110518257
XM_036951867.1 mRNA upstream 114333 12060272 ~ 12065637 (-) False LOC110518257
TU1737190 other downstream 193217 11609036 ~ 11745913 (-) True LOC110528752
TU1736174 other downstream 764647 11167621 ~ 11174483 (-) False G1516784
TU1736155 other downstream 846686 11089229 ~ 11092444 (-) True G1516771
TU1736140 other downstream 890202 11048405 ~ 11048928 (-) True G1516757
TU1735899 other downstream 1082816 10853569 ~ 10856314 (-) True G1516562
TU1737466 other upstream 1626 11947565 ~ 11948345 (-) True G1517784
TU1737532 other upstream 74833 12020772 ~ 12022440 (-) False G1517822
TU1737534 other upstream 74833 12020772 ~ 12022440 (-) False G1517822
TU1737535 other upstream 74833 12020772 ~ 12022440 (-) False G1517822
TU1737536 other upstream 74833 12020772 ~ 12022440 (-) False G1517822

Expression Profile