RNA id: XM_036951865.1


Basic Information

Item Value
RNA id XM_036951865.1
length 3965
RNA type mRNA
GC content 0.56
exon number 7
gene id LOC110518257
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12060272 ~ 12065637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATTCAAACACGTTTGTCATTTCTTCCCATAGCGATGCCTGGACGACCCCGAGTTCAACTCGTTTTGGGCGAGCAGCCAAGTGACAGATTTACAAAAAGTCTGCATTTGGTTGGATCCCCCAAAAAGTTACATGAAATCTTTAAGGCTGTCATTCTGAAATGTTTGAACATAGCGATGCAGGGCATAGCTCATTTCAAAAATAGGATTTACCCTTAAATTCAGTTGACCCTTGGGAGACGGTTGTCGTTTCACACAAAGGTAACCTGGGGACCCGAGGTAGGCGAGACTCAGCAGTGTAACTTCCCTTTGATGTTGCCACATCTTAGTTCAATGGCTGAATAAAGATCTCTAGCTCAAGACGTTTACATTGAAGAAAAATGGCCGCAATTCCGGGGTGTTGCAAAATACTTTGCAACTTAGGGGGTGCCTCCTATGGAGAAATGCGACATCTGTCTGGTCGGCTTAGTTCATTGACTAACATATGAACCAACAAATATTTGCGAGATGGATGTCTTGCTTCCTCTTCCGTAATCTCTGGTACCGGTAGGAGTTCGTGTCCGCCAAGCCGGGTAACGTCACTTCTCCGGGAAGAGAAGAGCAAAATACGGATGCCGAATGGAATAACAAAACAGTAGTTGGTCCAGAATCAGGTTGCCCTTGGAGATGGGAGACTGATCTGACATAATGTGATTGGCCAGCCTGAGACTGAAGCTTCCCTGACTCTTCCCCCAGCGAATGTAGAACACCAAATGCCTGCTGACGAGCAGTCTGCCCAGTCTGCTCAAGATGCAGAGCAGGGTCAGACAGATCCACAGAAGGAGATGGACACTGTTAGCAGgggggagagggaggaggagcagcCCGGGCCGTCCAGAGTTCCTCCCCCCAGACAGGGCTACTGCAGCTGCTGCCAGATACTCTACAACAACGTGGAGCAGCACATCCTAAGCCCCAGACACAGGGAGGTGGTTCATAGCACTCGCACCTACGTCCCCTCTGGAAGCCTGATGGAGAGATTCTTATCTGACGTAATTCAGCATCACCCGAACCTCTACAACGACCctcgCCCCACCCACGCTGACCTGCCATCTCTGAGCAGCCCGCTGGTTCCCAGGGAGGAGCTATTGGATCTCTGCGCCAGCAACGATGACGGGGCGTCATTCGGAACCCGAGAGCACATGCCCAGCTCTGACAACTCTTCCTGTCAGCTCCTTTACGTACAGGAAGCGGATGTTGCCTCGGAAACAAGGACCAGCCTACCAGAAGAAGGTAGAGGGGGAAATGTGGGGTCAGAGAGGTTAACCCCAACTGCTCCAGACCAGGATATAAGACCAAGTTCTGAGGAAGGGACTCACTCACGCACACCTTCCCTGGACCACTTACCAACACACCCCACGAGACCTTGTAGCCAGAAGCAAACCCCTCCTCCGCTCCACCGGAAAGCACACAGGAAGACCAAccggcggagagagagagggagcaactcctcttcctccatccatcctccctgctcccccgcTTCTCCACAGTTGTGTGCTACCCCAACGGACCAGATAACCCAGGGAACACCAGAGAACCAGCCTCCCTACAGGCCGAGGGACCGGACCCCAGACCCCAAGCCCCGGACGGTAAACACTGGCTGGGCCGCGTGGGCGGGGGTGCCCCCATGGAGGCGGAGGGAGACCCAGAAGGAGCAGGCGTTCTCCAGTGACCACTCCGACCCTGAGGGGGACACGATAGAGGAGGTGATCCAGAGACACTGCTACGGCCGCAGTCCCACACAACACCACCAGAGGGACCACAACATATggacagggggggagagaggagaggcaaggGGGGATACGGACAGCTTCCACCTTAGCCTCCCTGGCTCACTGGGAGTGGGTTCGGGATCGGATGCGGACTGGGATACCCCTGTGCAGGTGGCTATTGGGAGGGGGCAGGAGCGGAGGAAGGACATCCCTGTGGTCGTGGGCTTAAGGCAGGGTGGAGGGGAGCGGGAGGGCAGGGCCCTGGCCTGTCTCACGGAGGTACAGGTGAACATGGAGGACCAGATGTACACCAGCCAGCTGGATTCTGCCCTCAACCCTGAGACTAGGACAgcgggggaggcagagggagaaatGGAACGAACAGTGGAGGAGATTCTCCCTGCACTCCCCCACATCCCTGTGTCCTTCCTGGGGAAGACGTGGACCCAGGTGCTGCTGGAGGACGAGCAGAAGGTGGAGAACATGGTTCGAGAGTTCCGACAAGGAAGGTTCATCTGCTACTTCAAAAGTGAATCCCTCGCCAGGCATGGGAAGCGGATCAGCAGAGATATGGAGCGTGGCCAGAAGGAGGGGTTGGAAGACGGGGGGTGGGTTCCCCTTGGTGACCATGACAATGAAGATGACGACCCAGAATGCCacatgagggggagggaggtgttTAGGCGGAGGAAAGTTAGTAGGAGTTATCGCCTGGCGTCCAGGTGTCAGGTGGTCAAAGTGAGTCACGGGACACAGACTACAGCAGCCATCATCCCCACCATCCGACAGAGAACACTGGACCAGACGGGCACATCCCCGGACATCCTAACGCTGCCGTGTCAGGACCCCGGCGTTGACCAGGAGAAGACCCCAGAGATGAAGACAAGGCTGTGCTCTCTCCGCCTGCCTGTCTCCTACTCCCGCATCATGACCCCCCTGCAGCCCAAAACCACCCTGATCtatgtcctctcctcccccgaaACCCCTCCCTTTGACCCCAAGCCCCGCCTCAGACCTATCGCCAGGGGCAACCGCCGCAGGAAAAGGTCATGTGACGGGTGTGAAGGCGACGTGGGGGCCAAGGTCAAATACAAAAGGGTTCCTCTGAGGTACTATGACCCTGCCACACACCGCATTCTGAAGACCCCCCCCAAGGGCTTGAatctcaccccctcctcctctggccTCCCCAGACCCCCCCAGTCCCACGTGGTCAGACAACTGTTCAGGAGCCTGAGTCCAGACATcaatacagagagacaggggggagagggagggagagatgggtcgGGGGGTAGGAGGAGGGGTCGTAGCGGGGACAGTGTGGCGTCGGGGTCACTCTTAGAGGCAGTGGGGTCATTTGGAGCTGAAGGTCAGGGTTCATCGGAGGCAGGGTCATCTGTGACTACGCCCTTCAGCCGCTCCTCTCTGTCCAATAGCAGCCGATTTCTACTGAGCACGCTCTCTCCCGACACAAACTCTAACCCAGAAGTGACCCGGCAGCGGAggcggagaggaggagaacggaAGTTAAAGACGGACCGACCTCTAACCCCTGAGAAAGACCACTCTCCTCCGTACAGGCCTTGGACAAGAGGGGGTAGGGGAGAACGGCAACCAGCAAGACGCAGCTCCAAAAGGGGGCGACCACCTCAAATCAGCCCTCCACCTAAACCCCCACCACCCCAGGACCTCTCTCCCACAGTCGGGTCCAGGAAAGGGTCCTCGAGACGGGTCGCAGAGAGTAAGAAACTCCCAAGGCCCAAAAGCCCAGCCAGGGGGGTCACTTCGACCCCTCTGAAACAGGCCATCAGAACACCAAGCCGCCGGTCGTCCCCCCGACAATCCCCTGCTCCACTGCCCACCCGAACACTGAGGAGGAGCGTGAGGAGATGACGGGATGCATCTCAACAGTCTACAGgggcttcctttccttgtctcctttcctccaGATACACTGACATGAAATAAAATGGGCGTGTTTAGCAGGGTGAAGGTTCATAATGTAGCAGATACAAATGTTACTACTTCACATGATAAGAGCTTTGTCTGCTCCACTTCATTACAATTCTACCTGAAACGTTGACTGTTTCCACATGGCTTTCTCCTGTCCTGCTCTCGgtgcagatgaaggagaggagacgaggagcaTCTATTGAGATGTACCCTGGCTCTCTGAAGAgacggggtgagagagagaatgtggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737482 lncRNA downstream 16895 12043026 ~ 12043377 (-) True G1517793
TU1737533 lncRNA downstream 37044 12022176 ~ 12023228 (-) True G1517822
TU1737500 lncRNA downstream 65126 11994038 ~ 11995146 (-) True G1517807
TU1737488 lncRNA downstream 81000 11975921 ~ 11979272 (-) True G1517796
TU1737461 lncRNA downstream 87860 11946194 ~ 11972412 (-) True LOC110527304
TU1737561 lncRNA upstream 23045 12088682 ~ 12088909 (-) True G1517840
TU1737564 lncRNA upstream 39928 12105565 ~ 12161226 (-) False G1517842
TU1737576 lncRNA upstream 46828 12112465 ~ 12113094 (-) True G1517848
TU1737568 lncRNA upstream 51652 12117289 ~ 12161226 (-) False G1517842
TU1737570 lncRNA upstream 51652 12117289 ~ 12161226 (-) False G1517842
XR_005037375.1 mRNA downstream 10445 12046027 ~ 12049827 (-) False LOC110527249
XR_005037376.1 mRNA downstream 10445 12046027 ~ 12049827 (-) True LOC110527249
XM_036951860.1 mRNA downstream 87612 11928580 ~ 11972660 (-) False LOC110527304
XM_036951859.1 mRNA downstream 87612 11940489 ~ 11972660 (-) False LOC110527304
XM_036951858.1 mRNA downstream 87613 11940489 ~ 11972659 (-) False LOC110527304
XM_021625804.2 mRNA upstream 362 12065999 ~ 12068727 (-) True LOC110538825
XM_036951877.1 mRNA upstream 17216 12082853 ~ 12085584 (-) True LOC118941098
XM_036951876.1 mRNA upstream 20471 12086108 ~ 12092145 (-) False LOC110539058
XM_036951874.1 mRNA upstream 21090 12086727 ~ 12092136 (-) False LOC110539058
XM_036951875.1 mRNA upstream 21090 12086727 ~ 12092138 (-) True LOC110539058
TU1737532 other downstream 37832 12020772 ~ 12022440 (-) False G1517822
TU1737534 other downstream 37832 12020772 ~ 12022440 (-) False G1517822
TU1737535 other downstream 37832 12020772 ~ 12022440 (-) False G1517822
TU1737536 other downstream 37832 12020772 ~ 12022440 (-) False G1517822
TU1737466 other downstream 111927 11947565 ~ 11948345 (-) True G1517784
TU1737601 other upstream 174597 12240234 ~ 12245743 (-) False LOC110512633
TU1737603 other upstream 174597 12240234 ~ 12245743 (-) True LOC110512633
TU1737633 other upstream 195155 12260792 ~ 12263069 (-) True LOC110495544
TU1737645 other upstream 219441 12285078 ~ 12285632 (-) True G1517902
TU1737778 other upstream 518091 12583728 ~ 12600331 (-) False G1518019

Expression Profile