RNA id: TU1737633


Basic Information

Item Value
RNA id TU1737633
length 1702
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC110495544
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12260777 ~ 12272188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGATAACAAATCGGCGTTCTGGCTCAAATTCTGAGCTGACAAACAGTGTTCCCATTGTTCATTGTTTTTTGGTCATCAGGAGGTAAGTTAACTAAACCCTCTAACATGAGTTCTGTCTACCAGGCATTCAGTGGAAACACAGCACTGCACTTTGCCAGTTCTGTGCATGGTCGCCTGACTCAGGTAGATGCTGTGAAACTGCTGATGAGGAGAGGGGCCGACCCCAGCTCCAAGAACCTGGAGAATGAGCAGCCTGCCCAGCTGGTGGCTGAAGGGCCCGTCGGAGACCAGGTGCGGCGTATCCTGAAGGGGAAAGGCTACCAGGCCCGGTCTGCTGCCCAGTAGGATGCAATCTCCTGTCCAGAAACACTGTCAGTCAGACAGTCCAGTCTACGTAGAAATGATTTGCCATCGTATGTATGGCAGATGTCAGTTGTTTCAATGAAACAGTGAATGTTGTTCGCTACAGTGTAGTGTATTTTGAAGTAACCATGTGATCGTCtaccttaaaggggcaatctgcagttgttacatccatttttggacttgtaaATTATTAATATGTACCCATTGTTTCTTGGCAAATATGACTTATACATtcatcatgagcttagttcaactgtcgtaccccatcagaacccaaaatatataagcttgttttactccaatgtttataAACAAAGTACATGGAAACAAACACTATAAACAGTAGCTTCAAAATATGGTTCAagctataatgttgatatcatggatggttacTCCTTAGCCGTGCCTATGAATTTGAGTGTTAACCTTtctctagccccatccctcagctttttactgaaacgGGCAGAGAATACGCTTTGtttttgtttcaactgctgaCTGCCGCTTTAAGGAATGACGCCTGAAGGGGTTTTCACCACTAAACCACTTTGGGTTGAGTCACAGGTTGACTCACCTGTAATGCTGGTGTGAAACACCTTGAGCTGGAATGTGCATTGTAGCTAGGGCTTGACCACATAGTAAGAGTGTAATGTAGCTAGGGCTTGACCACATAGTAACAGTGTAATGTAGCTAGGGCTTGACCACATAGTAAGAGTGTAATGTAGCTAGGGCTTGACCACATAGTAACAGTGTAATGTAGCTAGGGCTTGACCACATAGTAACAGTGTAATGTAGCTAGGGCTTGACCACATGGTAACAGTGTAATGTAGCTAGGGCTTGACCACATAGTAACAGTAATGTAGCTAGTGCTTGACCACATAGTAACAGTAATGTAGCTAGTGCTTGACCACATAGTGACAGTGTAATGTAGCTAGGGCTTGACCACATAGTAACAGTGTAATGTAGCTAGGGCTTGACCACATACCAGTAACCTGAAGAGACGGGAGCTCAGGATTTTTGAATTTCTTGGAGGTTCTGGTACGGTGGCAGCATGGGGGTCTTGCcttattttattcattttaaatgtgtattttcatttactttataaataaatgaaaataaatgagTTGGCTAGTGTCACAAATAATTAAGCTATATAACGGGTCATTGAGTTTGTGCATATTTTGCTTTAGTACCCATCTCAATTATATACTGTACCATGGAGATGAGATGTTAGTACAATATCTAGACTTGTAATTTGTTTGATCTCTTTTGGAATGTAAATATAGGATATTTTTTATGTATTGTCACCAAATTTGTTAACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737625 lncRNA downstream 32135 12227855 ~ 12228657 (-) True G1517889
TU1737621 lncRNA downstream 39601 12220854 ~ 12221191 (-) True G1517885
TU1737570 lncRNA downstream 99566 12117289 ~ 12161226 (-) False G1517842
TU1737642 lncRNA upstream 12145 12275214 ~ 12278588 (-) True G1517899
TU1737648 lncRNA upstream 31443 12294512 ~ 12294796 (-) True G1517905
TU1737650 lncRNA upstream 34240 12297309 ~ 12297775 (-) True G1517907
TU1737663 lncRNA upstream 45990 12309059 ~ 12309613 (-) True G1517918
TU1737664 lncRNA upstream 46884 12309953 ~ 12310249 (-) True G1517919
XM_036951366.1 mRNA downstream 8243 12250356 ~ 12252549 (-) True LOC118936562
XM_036951411.1 mRNA downstream 10336 12245879 ~ 12250456 (-) True LOC118941062
XM_036951376.1 mRNA downstream 15126 12241548 ~ 12245666 (-) False LOC110512633
XM_036951352.1 mRNA downstream 23446 12230271 ~ 12237346 (-) True LOC118941032
XM_021608406.2 mRNA downstream 79721 12179066 ~ 12181071 (-) True LOC110527242
XM_036951032.1 mRNA upstream 18562 12281631 ~ 12288102 (-) False ck073
XM_036951033.1 mRNA upstream 18562 12281631 ~ 12288102 (-) False ck073
XM_036951034.1 mRNA upstream 18562 12281631 ~ 12288102 (-) False ck073
NM_001165102.1 mRNA upstream 18566 12281635 ~ 12288054 (-) True ck073
XM_036951309.1 mRNA upstream 67865 12330934 ~ 12342330 (-) True LOC110497022
TU1737601 other downstream 15049 12240234 ~ 12245743 (-) False LOC110512633
TU1737603 other downstream 15049 12240234 ~ 12245743 (-) True LOC110512633
TU1737532 other downstream 238352 12020772 ~ 12022440 (-) False G1517822
TU1737534 other downstream 238352 12020772 ~ 12022440 (-) False G1517822
TU1737535 other downstream 238352 12020772 ~ 12022440 (-) False G1517822
TU1737645 other upstream 22009 12285078 ~ 12285632 (-) True G1517902
TU1737778 other upstream 320659 12583728 ~ 12600331 (-) False G1518019
TU1737781 other upstream 320659 12583728 ~ 12600331 (-) False G1518019
TU1737782 other upstream 320659 12583728 ~ 12600331 (-) True G1518019
TU1737893 other upstream 643142 12906211 ~ 12910842 (-) True LOC110495512

Expression Profile