RNA id: XM_036951324.1


Basic Information

Item Value
RNA id XM_036951324.1
length 2894
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110495532
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12381425 ~ 12385624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTAATGCTCGATGACGTCCAGTGTCATTGGCACGTGGGCAGTGGTATTCCGACTCCGGGCCACATAAACAAAGGCACATTGTCAGTGTTAATCGCGGCCAGTCTAGTAGCCAGTTGGGGATGTGCATGGCCATCTGACCCGTTCTCTTCACAATGCTACATTTGCACTTGGATATGGATACAGCGGAGAAGATGTAATCCTCTAAATGTATGTATTATGGTGCACCGGGTGACAGTTTAAGCAGGGAGCAACATCGAGTGGATATTATCATAACTCCAGGAAGCGATTCGGGCATTGTGTCTTTGAAAATAGTCATACAACTGAAGCTATGCCGTGCGTCCAGGCTCAGTGCGGATCGTCGCCTCAAGGAGCTAGTCCCGCTTCGCAACAGAGCGCAAGCAGCTTCCACGCCGCTGGAGAGCACCACAGCCATAACTGCGACTTCCTAACGCCCGAGTTTGTCAAATTTAGCATGGACCTGACCAACACAGAAATCACATCAGCCACTATCACCAATCTTCCAAATGTCGGTGTTTTCGTGGACAGCTACTGTAACAATTCGAACTATGACGTCAAACCCCCTTGTCTATTCCAAATGCCCCATCCGGGGGAGCAGTCATCCATCAAAGTTGAGGACATCCCCATGTACCACCAGCAGAGTCACCACCACCAGCCGCATCAGTCCGATGAGATGGTCACTCCCTCCGGGTCCGTTTACTACAAgcccccctctccacacacacagacattccagAGTCCACCCAGCCATGCGTGGGATGATTCTGGATCTCTGTACAGTTTTCACCAGGACTACTTGGCGGTGGCGCACAGAATGGAGCAGCGGAAAAATGCCATATCCAGATTATCCTTGTTTTCTCTCAAGCATTCCCAAACCGGTAGTCCTTTGTCGGCGTGCCAGATGAGATTTGACGGGTCCCTCCAGGTGTCCGTGAACTCGGATACCTCAGGCAGGTATCATGGCTTGGAGAGCCAGGGCATCTTTGGTTCCAGCTCCCTAAGGAAACAGCACAGGGTGGGTTCCCCCTATTCGTTCCAGCTCGGTCACGGACATCACTTTATGGATAACCAAGCACCGTCGCCTCCTAGCCAAGGATCACCCACCAACACCGATGCTTTATGTGCGGTGTGTGGGGACAATGCCGCCTGTCAGCACTACGGCGTGCGAACCTGCGAGGGCTGTAAGGGATTCTTCAAGCGCACTGTTCAGAAAAATGCCAAATATGTGTGTTTAGCTGGGAAAAACTGTGCAGTTGACAAACGCCGGAGAAACAGGTGCCAATACTGCCGTTTCCAGAAGTGCCTTGTCACGGGAATGGTCAAAGAAGTCGTCAGGACTGCAAGTTTAAAGGGTCGACGTGGCCGGTTACCCTCCAAACATAAAATTCAAGACCCTTTGTCACCTGTCAGCATCCTTAACGCGCTAGTGAGGGCCCATGTGGACTCCAACCCCTCATTGTCTCGACTGGACTACTCCCGATTCCAGAATAATGCTGACAGCCAAATCGACGGAGATGATACGCAACATGTGCAGCAGTTCTACGACGTCCTAACCGTCTCCATGGATATTATCCGGGACTGGGCGCAAAAGATCCCAGGTTTTACCGATCTGCCGAGACCGGACCAAGATCTCCTCTTCGAATCAGCCTTCCTGGAACTCTTCGTTCTGCGTTTGGCTTACAGGTCCAACCCTGAGGAAGGGAAGCTCATCTTCTGCAACGGATTGGTTTTGCACAGGCTTCAGTGTAGGCGCGGCTTTGGAGACTGGATTGACACCATAGTGGAGTTCTCTGCAAACCTTCAAAGAATGAATATAGACGTTGCAACATTCTCCTGCATATGCGCCCTTGCCACAGTAACAGAGAGACATGGGCTGAAGGAGCCCAGGAAAGTAGAGGAACTTCAGAACAAGATGGTGAACTGTTTGAAAGACAAAGTGACTTTTAACGATGGAAGTGTCAGTCGACCAAATCACTTGTCAAAACTTTTGGGAAAGCTGCCTGAACTTCGCACGCTGTGTACACAAGGTCTGCAGAGGATATTCTACTTGAAACTGGAAGACTTGGTCCCTCCACCTGCAATAATAGACAAGCTTTTCCTCGATACTTTGCCCTTTTAGGTGACATATATCCTGTCATCATGTCAGATAGGCGAGGTTAATATGGCCATTTTTGAGTTCCCTATATCACGCATTATGCATTTTCTCTCATATTTATTTCCATTGTTTTTGTACCTCTCTTCATAAGAGCGCTTGATCATGTTTATAGGCCTACATGTCTGCATTGCCAGGTAAAAAAAAAGAGACAACACGACATTTAAGATGTTTTTAATTTAAACATGAATGAAGAGTTTGACAATATTACAATATCGTCGATTTCTGAAGAACATGGATGTCTTGAACTATTTGGTCTTGCTTTGAATTGTGAGTATTTTAATTTGATAAACTAACCATTTTCGATAACTATGTTGTTGTATGTAGACACTGGATAATGTATATGGAACATATATGCCTCGAACGTATAcagatttattttttatcaaataACTTATGGGAGATGTTTTATGTTGGCTATTTCTTGTCttgtcacacctggactgtgGTTATATTGCATTTGAATTAATAACGTATACTGCTAAATAATCTAACGTTTGTAAATGTGTTCGTTATTTTGATGGGTCAGGGGCTTACAATGTCAGGTTTTTCCATTCAAAATAAAATTCATGCCGTTTATTACACTTTTAAATGAATAATTATTTCTGATGGCAATTTATAAGGATTCTGACTTTATTTTAGTTGTTGAAATATCGTCATAAATCATCAAACATGATAATGGGGAAATGTGTTGTTAATATTAAATAGTAGCCTACTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736846 lncRNA upstream 5137 12367547 ~ 12376288 (+) True G1517284
TU1736838 lncRNA upstream 15337 12365306 ~ 12366088 (+) True G1517277
TU1736840 lncRNA upstream 20716 12359379 ~ 12360709 (+) True G1517279
TU1736839 lncRNA upstream 22383 12357915 ~ 12359042 (+) True G1517278
TU1736837 lncRNA upstream 24675 12354096 ~ 12356750 (+) True G1517276
TU1736865 lncRNA downstream 6154 12391778 ~ 12393361 (+) True G1517302
TU1736869 lncRNA downstream 28918 12414542 ~ 12415073 (+) False LOC110513922
TU1736871 lncRNA downstream 29577 12415201 ~ 12415454 (+) True LOC110513922
TU1736876 lncRNA downstream 32292 12417916 ~ 12418222 (+) True G1517311
TU1736877 lncRNA downstream 33745 12419369 ~ 12419744 (+) True G1517312
XM_036951378.1 mRNA upstream 36567 12343695 ~ 12344858 (+) True LOC118941038
XM_036951338.1 mRNA upstream 50857 12318790 ~ 12330568 (+) True LOC110495542
XM_036951373.1 mRNA upstream 63832 12308955 ~ 12317593 (+) False LOC118941037
XM_036951348.1 mRNA downstream 4619 12390243 ~ 12404033 (+) False LOC110527229
XM_036951347.1 mRNA downstream 10115 12395739 ~ 12404033 (+) True LOC110527229
XM_036951368.1 mRNA downstream 19235 12404859 ~ 12415478 (+) False LOC110513922
XM_036951369.1 mRNA downstream 19237 12404861 ~ 12409003 (+) False LOC110513922
XM_036951367.1 mRNA downstream 62938 12448562 ~ 12454072 (+) True LOC118941034
TU1736637 other upstream 440320 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 737667 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 746446 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1288871 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1364336 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 448027 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 549030 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 551899 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 801477 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 2049138 14434762 ~ 14436120 (+) True G1519096

Expression Profile