RNA id: XR_005037324.1



Basic Information


Item Value
RNA id XR_005037324.1
length 319
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC118941039
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12571503 ~ 12583644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACATCTTGTGGTGTTGTTGAGTTGTCTCATAAACTGAATATGAGAATCCAAAGTATTGCCAGTCTCAACTGTGTAGTATTTCAACTCGTGTGCTACTTAGACAAGAAAGAGAAAAGTCAAAAAGTCTTTCACAGTATCCGGCTCTAGAGTACTTCACCACCTCACTCCTTCCACTGGACCACATGATTTCTTGGAATTAGAAAGTGAAAACAATGTGTTATTGTAAATGGACTTACTGACTCAGTTCTATTCTACATTCATAGAATTACTCATGTAAAAAACATTCCATTAAATTCTGCACTACCAGTTTCTACTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1737749 lncRNA downstream 5701 12562815 ~ 12566021 (-) True G1517994
TU1737735 lncRNA downstream 16673 12554270 ~ 12555049 (-) True G1517981
TU1737757 lncRNA downstream 21732 12542254 ~ 12549990 (-) True G1518000
TU1737756 lncRNA downstream 33459 12538035 ~ 12538263 (-) True G1517999
TU1737755 lncRNA downstream 35138 12536359 ~ 12536584 (-) True G1517998
TU1737817 lncRNA upstream 79250 12651639 ~ 12653753 (-) True G1518044
TU1737852 lncRNA upstream 132605 12704994 ~ 12705267 (-) True G1518076
TU1737858 lncRNA upstream 146802 12719191 ~ 12719426 (-) True G1518082
TU1737871 lncRNA upstream 175282 12747671 ~ 12747916 (-) True G1518095
TU1737923 lncRNA upstream 309052 12881441 ~ 12882005 (-) True G1518134
XM_021608380.2 mRNA downstream 17851 12552668 ~ 12553871 (-) True LOC110527216
XM_036951293.1 mRNA downstream 64996 12470084 ~ 12506726 (-) False LOC110528732
XM_021570828.2 mRNA upstream 39625 12612014 ~ 12616159 (-) True LOC110495529
XM_036951372.1 mRNA upstream 93457 12665846 ~ 12677668 (-) True LOC118941036
XM_036951370.1 mRNA upstream 110720 12683109 ~ 12695620 (-) True LOC110527208
XM_036951346.1 mRNA upstream 257214 12829603 ~ 12833072 (-) True LOC110527202
XM_036951341.1 mRNA upstream 261253 12833642 ~ 12837526 (-) False LOC110495527
TU1737645 other downstream 286090 12285078 ~ 12285632 (-) True G1517902
TU1737633 other downstream 308653 12260792 ~ 12263069 (-) True LOC110495544
TU1737601 other downstream 325979 12240234 ~ 12245743 (-) False LOC110512633
TU1737603 other downstream 325979 12240234 ~ 12245743 (-) True LOC110512633
TU1737536 other downstream 549282 12020772 ~ 12022440 (-) False G1517822
TU1737778 other upstream 11339 12583728 ~ 12600331 (-) False G1518019
TU1737781 other upstream 11339 12583728 ~ 12600331 (-) False G1518019
TU1737782 other upstream 11339 12583728 ~ 12600331 (-) True G1518019
TU1737893 other upstream 333822 12906211 ~ 12910842 (-) True LOC110495512
TU1737891 other upstream 399264 12971653 ~ 12976441 (-) True LOC110513917