RNA id: XM_021570828.2


Basic Information

Item Value
RNA id XM_021570828.2
length 2408
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110495529
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12612014 ~ 12616159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATGAGGACCAACTAGACCCCTCCTTCACGGGGACAGGAGGCATGTCCAGGCTGTCTCGCTTCATGGTGTTGGTGAAGGGCTGGTCATCTCACAGTAGTCAGCCCTCAGATGCCCTTCCTTTAGATTCAACCATGAAGTCACACACAGAGTTCAGAGAGGCCTGGAGAGCAGAGAGCATGTCCAGCACCAGACTCTCTGACCAAGTCCGCAGGAGGAACAATGGTCAATGGCCCCTTGCAGCATACAATATGAACAACTGCAACAACAAGGATGACAAAAAAGACGAGAAGAAGGATGAGAAGAAACCGGATCCCCCGAAGCCACCTGATAAGAAACCAGATGAGAAGAAACCGGATCCCCCTAAAGAAGTGTGGATCATTGACCCCGCCACAGATATGTACTACCAATGGCTGACAATAGTAGCTGTCCCAGCATTCTACAACTTAATGCTTCTGGTGCCAAGAGCTAGTTTCAATGACCTGCAAGCCAACTATGTAATGCTGTGGATGGTTCTCGACTACACTTCAGATGTCATCTATTACATTGACACGTTTGTGAGATCTAGGACAGGTTTCCTGGAACAAGGATTGCTCGTAAAGGACCCAGTGAAACTAAAAGAACACTACCGAGCCCAGAAGCAATTTAAATATGACATCATATCGATGATACCTACCGATCTTGCCTTCATTCCATATGGTTACAACAATCCAGAGTTCAGATTCAACCGCCTCGGCAAGATGGCGCGCCTCTTTGAGTTCTTCGACCGAACGGAAACCAGGACAAACTACCCCAACATTTTCAGAATCGGCAACCTTGTGCTTTACATCCTGATCATCATCCACTGGAACGCTTGCGTCTTCTACGCCCTCTCCAAACTCCTGGGCTTCGGCTCAGACACCTGGGTGTACCCAAACATCACTGACCCCGAGATGGGCCAGCTGTCCAGGAAGTACGTCTACTGCCTCTACTGGtccaccctgaccctgaccaccATTGGAGAGACCCCGCCCCCTGTCAGAGACATCGAGTACCTGTTTGTAGTCGCCGACTTCCTCACGGGCGTGCTGATTTTTGCCACCATTGTTGGTAACGTTGGCGCCATGATCTCCAACATGAACGCAGCACGTGCCGAGTTCCAGGCCAAGATCGACTCCATCAAGCAGTACATGGAGTTTCGTAAGGTCTCCAAGGTCCTGGAGGCCAGGGTGGTCAAGTGGTTTGACTACCTGTGGACGGAGAAGAAGACCTGCGACGAGAAGGAGGTTCTGAAGAACCTGCCGGACAAGCTGAAGGCTGAGATTGCCATCAACGTCCACATGGAGACGCTGAGGAAAGTGCGTATCTTCCAGGATTGTGAAGCCGGCCTGCTGATCGAGCTTGTGCTCAAGCTGCAGCCGCAGGTCTTCAGCCCCGGAGACTACATCTGTAAGAAGGGCGACATTGGCCGAGAGATGTACATCATCAAAGAAGGGAAGCTGGCTGTGGTGGCGGACGACGGGGTAACACAGTGGTGTGTGCTGAGCGATGGGGCGTACTTCGGAGATCTCAGTATCCTGGGCATCAAGGGCAGTAAGGCTGGCAACAGAAGAACAGCCAACATCAGGAGCGTGGGTTACTCTGACCTCTTCGCCCTGTCTAAAGACGACCTGATGGATGCTCTCACTGAGTACCCTGACGCCAAGTACGCTCTGGAAGAGAAAGGCAAGGCCATCTTGATGAAAGACAACCTTATTGATGAGGAATTGGGAAACAAGGCCGACCCCAAAGAAATGGAGAACAAAGTCCTTACAATGGAGACCAACATGGAGGTCATGACGATCAAGTTCACCAGAATGATTGCAGAGTGGGCAACATACCAGGCCAAGGTCAAGCAGCGCATCAGCAACATGGAGGCCAGGGTCAAACCCCTCAGGCAGGGGGAGGATGAGGTGATGAAGGATAAATAATCACATGCAGAATATCTACTCCACATATTTAACAGACACGGACATTAAATGTAAATCTATAACCCATACTCACAATTTAGATCTGGTTAGATCTAAATAGCTTTCCATCCAAGTGGATTATAACCATAAACTGTATTGTTGACTAGTCAAAAGCAGtgaaggctggtgggaggagctataggaggatgggctcattgtaatggttgcaatggaataaatggaacgcagtcaaacatgtggtttccatatgtttgatacaaTTAAATGTTTTGCATTCtaaccattacaatgagccagtcctcctatagctcctcccaccagcctccactggtcaaaAGTATACCTAGATTCAAACATAAACTCAGCCAAAAAAGAAAGTCCTCTCACTGTTAACTGCGTTTAaggcaaacttaacgtgtaaatatttgtgtgaacataagattcaacaactgagacata

Function

GO: NA

KEGG:

id description
K04950 CNGA3; cyclic nucleotide gated channel alpha 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737764 lncRNA downstream 28370 12571503 ~ 12583644 (-) True LOC118941039
TU1737749 lncRNA downstream 45993 12562815 ~ 12566021 (-) True G1517994
TU1737735 lncRNA downstream 56965 12554270 ~ 12555049 (-) True G1517981
TU1737757 lncRNA downstream 62024 12542254 ~ 12549990 (-) True G1518000
TU1737756 lncRNA downstream 73751 12538035 ~ 12538263 (-) True G1517999
TU1737817 lncRNA upstream 35480 12651639 ~ 12653753 (-) True G1518044
TU1737852 lncRNA upstream 88835 12704994 ~ 12705267 (-) True G1518076
TU1737858 lncRNA upstream 103032 12719191 ~ 12719426 (-) True G1518082
TU1737871 lncRNA upstream 131512 12747671 ~ 12747916 (-) True G1518095
TU1737923 lncRNA upstream 265282 12881441 ~ 12882005 (-) True G1518134
XR_005037324.1 mRNA downstream 39625 12571722 ~ 12572389 (-) False LOC118941039
XM_021608380.2 mRNA downstream 58143 12552668 ~ 12553871 (-) True LOC110527216
XM_036951294.1 mRNA downstream 105288 12470084 ~ 12506726 (-) False LOC110528732
XM_036951372.1 mRNA upstream 49687 12665846 ~ 12677668 (-) True LOC118941036
XM_036951370.1 mRNA upstream 66950 12683109 ~ 12695620 (-) True LOC110527208
XM_036951346.1 mRNA upstream 213444 12829603 ~ 12833072 (-) True LOC110527202
XM_036951341.1 mRNA upstream 217483 12833642 ~ 12837526 (-) False LOC110495527
XM_036951340.1 mRNA upstream 217483 12833642 ~ 12837832 (-) True LOC110495527
TU1737778 other downstream 11683 12583728 ~ 12600331 (-) False G1518019
TU1737781 other downstream 11683 12583728 ~ 12600331 (-) False G1518019
TU1737782 other downstream 11683 12583728 ~ 12600331 (-) True G1518019
TU1737645 other downstream 326382 12285078 ~ 12285632 (-) True G1517902
TU1737633 other downstream 348945 12260792 ~ 12263069 (-) True LOC110495544
TU1737893 other upstream 290052 12906211 ~ 12910842 (-) True LOC110495512
TU1737891 other upstream 355494 12971653 ~ 12976441 (-) True LOC110513917
TU1738554 other upstream 768597 13384756 ~ 13402621 (-) True bcor
TU1738815 other upstream 1123292 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 1354922 13971081 ~ 13972289 (-) False G1518991

Expression Profile