RNA id: XM_036951370.1


Basic Information

Item Value
RNA id XM_036951370.1
length 2267
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110527208
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12683109 ~ 12695620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTTCGGGCGGAGTCGACTGCAACTGGGATATATCTGTGTGCAGTGAGTACGCAGGAACAAGCCGTGTACAAGTCCGTCTGTTTTTGGAATTTGGTACTCCGGAGAGGGACCGGCAGACAGAAGCGAAGGGAACTGAATAAAGAAAGAGCACCACACAGTCGAAAATGTCTTCGAATAAAGACGATGGtggatggaagaagtttgtatgGGATTCGGACAAGGGGGAATTTTGTGGACGCACAGGGGGGAGTTGGTTTAAGATTCTAGGGTTCTACTTAATCTTCTATGCTTTTCTGGCTGGAGTATTCATCGGCACCATCCAGGCCTTGCTTCTCACCCTCAGTAACTACAAACCCACCTGGCAAGACAGAGTTGCTCCCCCAGGCCTGTCACACACCCCACGCTCCGACAAATCCGagatcgccttcaacttgaatGATGTGGAGACCTACTTGACTTACACCAAGGCCATGCGAGAGTTCCTGGTTATGTACGACGACGACAAACAGCGGGACCAGATGAAATACGAGGATTGTGGAGAGCAACCGGAAGACTATAAGAACCGTGGTGACCTGGAGAGTGATGTGGGGATCAGGAAGGCCTGTCGCTTCCAGAGGAGCTGGCTTGGGCCTTGCTCCGGCATGGAAGACAGAGACTTTGGCTTCAAGGAAGGAAAACCCTGCCTGATCGTCAAGCTCAACAGGATCGTCAACTTCAGGCCACGGCCCCCCAGCTCCAATGAAAGCATCCCTGAGGGAGCCCAGACCAAGGTCCAGCCCAACGTCATGCCCATCTTCTGCACCAACAAGagagaggaggacgcCGGTAAGATGGGTGAGGTGAAGTACTACGGCATTGGGGAAGGTTTCCCCCTCCAGTATTACCCTTACTACGGCAAGCTGCTTCACCCCCAGTACCTGCAGCCCCTAGTGGCCCTCCAGTTCGTCAACCTCACCATGAACACCGAGCTGCGCATCGAGTGCAGAGCCTACGGAGAGAACATTGGCTACAGCGAGAAGGACAAGTTCCAAGGAAAATTTGACGTTAAATTCACTGTCACCAACTTATGACCACAGTTAGGTTCATAGCACTTTTTCTCTccagccccctctccctccccaaccATTTCTCAAAAGTAACAAAATAATTTAGGAAAGGGAGTTGGGGTGGAAATACAAagttaagtttaaaaaaaaataaaaaatcacaacTAGTCTTGAACAAAAGTCATAACATACGGGACGACACTTCATCTGTCTGCTTTACACTGGCTTCTCTGCTTCTGTCTAGGGTTAGAATGTAAGTCGCAGGAGGAGTAGCAATAGCATCAAGTATTTATTCTACTGTAAATGAATAATATTCCTTGAGCCATGGGGACATGTTTCATTTATGACTGTAAATTGTAATTCCACTACTGATGTGTAGCGAGCAGTGTTTTGTCCCCCTCCGTATTGCTGCCTTGTGTGGTTTCTATACATATTTTTGGAGTGTACAGTGCAGTAGTCGCATACATTGGTCCTTTCCAAGCCATGTTGTAACCTGTTTACTTATGTGAGCAAGCTTTAGCAGTCCAAGatgtgtatatactatatatgaatACTTAATAATTTAAAATATTGACACGGTACTCTCTGATCTCTTCTGACCCGTGTGAGGAAAAAGGCTGCACTCCAGGGAACTAGGCCTACTCTTTCCTTATTTTTGCCTTTGTCTGATTGATTGTGAGAATTTTCACATGGCTTTTCTTTTAGAATCATTTAAATGTGGGATAAGGGTTTTATTACGctattgtttcaggcttttacttcCTTTCGTTCTGTTTGATTCCCTCTTAATGTCGAGTTGTGTCTCCGGGTTGTTGGGCTACTTTTGCCTGTTGTACGGCAACGGTGCTAACTCTGCTTTTTAAAGATGATTGTTTTGCTCAATTACGTCACCTCACAACGTGGTGTAACTTTCTGATGAATGTGTTAACCATTTTACATGGTGGAAGGAGTTTTATATTTATGTGGTTGTactttttttaatttaatttttttctGCAGAAAAGTGTAATGTATAAATACAATACCAAAGTCACTGGTCCAAGTTGAGAATCTTATCAGAAGCAGTGCTGTACCCCGTGTTTTTAGGATTTCTTGTCGATGTTAAGTGCTAAACGTCAATGTCTAACATCAGTCACGTTATCAGGAGTTCTCATCCGCTCTTGTCATTTATTTAATCCCAGTAAGAAAAAAACCTGAAATAAAATGATGAAAACACAA

Function

GO: NA

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737817 lncRNA downstream 29356 12651639 ~ 12653753 (-) True G1518044
TU1737764 lncRNA downstream 99465 12571503 ~ 12583644 (-) True LOC118941039
TU1737749 lncRNA downstream 117088 12562815 ~ 12566021 (-) True G1517994
TU1737735 lncRNA downstream 128060 12554270 ~ 12555049 (-) True G1517981
TU1737757 lncRNA downstream 133119 12542254 ~ 12549990 (-) True G1518000
TU1737852 lncRNA upstream 9374 12704994 ~ 12705267 (-) True G1518076
TU1737858 lncRNA upstream 23571 12719191 ~ 12719426 (-) True G1518082
TU1737871 lncRNA upstream 52051 12747671 ~ 12747916 (-) True G1518095
TU1737923 lncRNA upstream 185821 12881441 ~ 12882005 (-) True G1518134
TU1737881 lncRNA upstream 186905 12882525 ~ 12885636 (-) True G1518100
XM_036951372.1 mRNA downstream 5441 12665846 ~ 12677668 (-) True LOC118941036
XM_021570828.2 mRNA downstream 66950 12612014 ~ 12616159 (-) True LOC110495529
XR_005037324.1 mRNA downstream 110720 12571722 ~ 12572389 (-) False LOC118941039
XM_021608380.2 mRNA downstream 129238 12552668 ~ 12553871 (-) True LOC110527216
XM_036951296.1 mRNA downstream 176383 12470084 ~ 12506726 (-) False LOC110528732
XM_036951346.1 mRNA upstream 133983 12829603 ~ 12833072 (-) True LOC110527202
XM_036951341.1 mRNA upstream 138022 12833642 ~ 12837526 (-) False LOC110495527
XM_036951340.1 mRNA upstream 138022 12833642 ~ 12837832 (-) True LOC110495527
XM_036951343.1 mRNA upstream 144574 12840194 ~ 12844442 (-) True LOC110495524
XM_036951342.1 mRNA upstream 154470 12850090 ~ 12853780 (-) True LOC118936561
TU1737778 other downstream 82778 12583728 ~ 12600331 (-) False G1518019
TU1737781 other downstream 82778 12583728 ~ 12600331 (-) False G1518019
TU1737782 other downstream 82778 12583728 ~ 12600331 (-) True G1518019
TU1737645 other downstream 397477 12285078 ~ 12285632 (-) True G1517902
TU1737633 other downstream 420040 12260792 ~ 12263069 (-) True LOC110495544
TU1737893 other upstream 210591 12906211 ~ 12910842 (-) True LOC110495512
TU1737891 other upstream 276033 12971653 ~ 12976441 (-) True LOC110513917
TU1738554 other upstream 689136 13384756 ~ 13402621 (-) True bcor
TU1738815 other upstream 1043831 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 1275461 13971081 ~ 13972289 (-) False G1518991

Expression Profile