RNA id: XM_036951341.1


Basic Information

Item Value
RNA id XM_036951341.1
length 1804
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110495527
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12833642 ~ 12837832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttcctgtctctcaggTCATTGCCCTCCCTCTCCGCCCGCTCTCTCCAGAGTTGTGCTCCACAGAGCAGCCAGGAGTAGAGAGGTGCCTCACCCAGAGATCAGGCCATGTTTCGGCTGTCCCAAACCTGtttccttctcctgctgctgcacGTCGTGGCCTCCGAGGTCTTCCTGAACAGTGACGATGCTAACCAGGTTCTGAACCGGCGGCGGCGGGCCAACAGCCCATTTGAGGAGTGGCGgcagggagacatggagagagagtgtATCGAGGAACGCTGTGACAGAGAGGAGGCTAGGGAGATCTTTGAGGACGACAAACTGACTACTGAATTCTGGAACACATATTACGATGGAGATGCCTGTGTTTCTAAGCCATGTGTCCACAATGGCGTCTGCAAGGACGGGATTGGGATGTACACCTGCTTCTGTCTCGCTGGATTCCAGGGGTACAACTGTGAGATTGCCATTCCTGAGCTGTGTGAGAATAAGAATGGAGACTGTGATCACTTCTGCCACGTGAAGAAGGACAGTGTGCAATGCTCCTGTGCTGATGGCTACTATCTGGACACAGACGACAAGTCCTGCCTTTCcaacgAGGCCTTTAAGTGTGGCTTTGTGGTATCCAAGAACACCCGCAGCATCTTCATCTACCAGCCTAACACCACTGCCACCAACACCACTGAAAAGACCAACATGATGGAGGACCCTATCAGGGAAACGGCCTGGAACGTAACCCAACAGAGAGAAATCCAATTTGCATTTGAGGATGACGTTATCGAAATGGTGAAGGAGAAGCCAGTCTTTGCCGAGGCGAGAGGCAACACCCGTATTGTCAATGGGGAGGAGTGTCCTCCTGGAGAATGTCCCTGGCAGgcTTTCCTGGTAAACCACGAGGACAGGGGCTTCTGTGGAGGAACCATCCTGAATAAGTACTTCATCTTAACGGCAGCACATTGCATGAACCAGACACGCTCCTTTTACGTTGTCCTCGGAGAGTTTGACACGGAGGTGAAGGATGGGCGGGAGGCCATCCACCAGGTGGAACAGGTGTTCATCCACAGGTCCTACATCTCCACCACCTATCACAACGACATCTCCCTCGTCATGCTGAAGGACCCTATCAAGTTCACCCAGTTcatcctccctgcctgcctgcctgaacGAGACTTTGCAGAGAAGGTGTTGATGAAACAGCACGACGGGCTGGTGAGTGGGTTCGGCCGTGTGGGGGAGGCCAAGCAGCCGTCCACCATCCTGCTGCGTCTGACCGTGCCCTACGTACCCCGGGCCACCTGCCTTCAGTCCAGCCAGCACAAGATCTCCAACCGCATGTTCTGCGCCGGCTACGATAAGGAGAAGAAGGACGCGTGCCAGGGGGACAGCGGAGGACCCCACGTCACCCGTTACGGGGACACTTGGTTCGTGACGGGTGTGGTGAGCTGGGGCGAGGGGTGCGCCCGTGAGGGCAAGTACGGCATCTACACGCAGGTGTCCAAGTACATCGACTGGATCCGGGCGGTCATGGGGAAGTTTCTCCccaaggagggagggaagaggaagacgaGGGGGGCAGGTAGAATGCACTCAATGATGTGGGTTTGAGGGAgacaaaggagagaggagaaccaATCATTAAAGAGGCTTGGGGAATTATGGGCAATAAACATTGTTGTGTGGTTTATCATTGTTTTTCACAAAATGTATCCAAGACCAAGTAACTTAAggtaaagaaaaaaacatgttttgtttgaATGTCCAGTTATCACATACCAACATTAAACTACATTACACAATATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737871 lncRNA downstream 85726 12747671 ~ 12747916 (-) True G1518095
TU1737858 lncRNA downstream 114216 12719191 ~ 12719426 (-) True G1518082
TU1737852 lncRNA downstream 128375 12704994 ~ 12705267 (-) True G1518076
TU1737817 lncRNA downstream 179889 12651639 ~ 12653753 (-) True G1518044
TU1737764 lncRNA downstream 249998 12571503 ~ 12583644 (-) True LOC118941039
TU1737923 lncRNA upstream 43915 12881441 ~ 12882005 (-) True G1518134
TU1737881 lncRNA upstream 44999 12882525 ~ 12885636 (-) True G1518100
TU1737884 lncRNA upstream 61354 12898880 ~ 12900585 (-) False LOC110495512
TU1737928 lncRNA upstream 66305 12903831 ~ 12904177 (-) True G1518139
TU1737932 lncRNA upstream 85551 12923077 ~ 12923360 (-) True G1518143
XM_036951346.1 mRNA downstream 570 12829603 ~ 12833072 (-) True LOC110527202
XM_036951370.1 mRNA downstream 138022 12683109 ~ 12695620 (-) True LOC110527208
XM_036951372.1 mRNA downstream 155974 12665846 ~ 12677668 (-) True LOC118941036
XM_021570828.2 mRNA downstream 217483 12612014 ~ 12616159 (-) True LOC110495529
XR_005037324.1 mRNA downstream 261253 12571722 ~ 12572389 (-) False LOC118941039
XM_036951343.1 mRNA upstream 2668 12840194 ~ 12844442 (-) True LOC110495524
XM_036951342.1 mRNA upstream 12564 12850090 ~ 12853780 (-) True LOC118936561
XM_036951345.1 mRNA upstream 19723 12857249 ~ 12862173 (-) False LOC110512308
XM_036951344.1 mRNA upstream 19723 12857249 ~ 12862211 (-) True LOC110512308
XM_036951350.1 mRNA upstream 24803 12862329 ~ 12865369 (-) False LOC118941031
TU1737778 other downstream 233311 12583728 ~ 12600331 (-) False G1518019
TU1737781 other downstream 233311 12583728 ~ 12600331 (-) False G1518019
TU1737782 other downstream 233311 12583728 ~ 12600331 (-) True G1518019
TU1737645 other downstream 548010 12285078 ~ 12285632 (-) True G1517902
TU1737633 other downstream 570573 12260792 ~ 12263069 (-) True LOC110495544
TU1737893 other upstream 68685 12906211 ~ 12910842 (-) True LOC110495512
TU1737891 other upstream 134127 12971653 ~ 12976441 (-) True LOC110513917
TU1738554 other upstream 547230 13384756 ~ 13402621 (-) True bcor
TU1738815 other upstream 901925 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 1133555 13971081 ~ 13972289 (-) False G1518991

Expression Profile