RNA id: XM_036951350.1


Basic Information

Item Value
RNA id XM_036951350.1
length 1687
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC118941031
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12862329 ~ 12865373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagaaattgatttgctgtgcgtgtgtttgtggagTATGTGTTTGTGGGAGGACTGAACTTGGATTGAGCCCTGAGAGCTCAGTAATGGAGTCGTCTACGACCACGGACGCTCTGAAAGTGCAGCTCAGACACCTTATCCTGCTAGTCCTCTATATCCCAGCCTGCACCGGACTCCCTGGAGCTCCAGTGTTCCTGAGCACACAGGAGGCCAATGAGGTGCTCCATCATCAGCGGTCGCGGCGTGCTAACAGCCTGCTGGAGGAGCTGAGACTGGGAGACCTGGAGAGAGAGTGTCTGGAGGAGCAATGTGGCTACGAGGAGGCACGGGAGATCTTCACCCTCCCCGAACAATTGGAGGAGTTCTGGAAGAGCTACTCAGtggTGGATCAGTGTGAGTCTGGCCCCTGCTTGAATGGGGCTACCTGTGTAGGTCAGGTGAACACCTACATCTGCATATGTCTCCCTGGGTTTGATGGACGAAACTGTGGCCAAACCTTGATGAACTCTTATGATGGTTGTCTGTACAGAAATGGGGGATGTGAGCACTTCTGTACAGAGTTTCCAGACCTGTCTCACCATTGTCACTGTGCCCCTGGGTACAGCCTGGACAATGACAGCAGTAGCTGCATACCCCAAGttcCGTTTCCCTGTGGAAGAATTGTAAAAACGTTCAGGCCCGGGCCCCGAATTGTGAAAGGCACAATTTGTCCTAAGGGAGAGTGCCCATGGCAGGTTATGCTGGAGTACATGAATGAATATAAATGTGGGGGGATCCTCTTGGCTCCACATTGGATCCTTACTGCTGCCCACTGTATGTGGCACACGACTGCCTCCCATTGGCAAGTCACAGTGGGTGAACACAACCGTGCGAAGAAGGAGGGCACAGAGCAGGTTCGCCGGGTGACGAGGATGCTGATCCACCCCCAATACAACCACACCTCCACAGACCGGGACCTGTCTCTGCTCTACCTCAAGAGGGAAGTAGTGCTTGGACCCTTCGTGGTGCCTGTGTGCTTGCCCGCCTTGGACGGCTCCTTCGGGCGCACACTGGGGGCCATGCGCACCTCCGTGGTGAGTGGCTGGGGCCGCCTGGCTCAGTCGGGACCCCCGTCCACTCTGCTCCAGAGGCTGGAGGTTCCTCGGGTCCCCCTACAGGAGTGTCGCACCACAGGCCTCAATGTGACCATGAACATGCTGTGTGCTGGGTTCAGGGATGGGAAAAAGGATGCGTGCCAGGGGGACAGCGGAGGGCCCCTGGTCACCCGCTACAAGAACACCTGGTTTCTGACGGGAGTGGTGAGCTGGGGTAAAGGGTGCGCCCAAGAGGACGTCTATGGAATCTATACCCGCGTCTCTAACTTCCTGGACTGGATCAATCAGACCATGGCGACCGGCTGAGTGGGAGTGTCCATTTAAAAACACCCCTCCAAAAAACACTGACATATCTCCTCAAGGATGATGCTGGATAATAGCCAAGACACAATCCTGCTCCAAACTAGAATCTGGATTAAGATGTAAACTCTAAATATAATGATGACATTAATCTTTATAGTTTCTTAGACAACCCTAAGATATATATTTTCTTTGATCCAATTATTAACAGAATAAATAAATAGTTATTTGAAAATAAAGTTGGATTGTTTTCCTAACTGATAAGAAACATAACACAACTTAGCGTGCATGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737871 lncRNA downstream 114413 12747671 ~ 12747916 (-) True G1518095
TU1737858 lncRNA downstream 142903 12719191 ~ 12719426 (-) True G1518082
TU1737852 lncRNA downstream 157062 12704994 ~ 12705267 (-) True G1518076
TU1737817 lncRNA downstream 208576 12651639 ~ 12653753 (-) True G1518044
TU1737764 lncRNA downstream 278685 12571503 ~ 12583644 (-) True LOC118941039
TU1737923 lncRNA upstream 16072 12881441 ~ 12882005 (-) True G1518134
TU1737881 lncRNA upstream 17156 12882525 ~ 12885636 (-) True G1518100
TU1737884 lncRNA upstream 33511 12898880 ~ 12900585 (-) False LOC110495512
TU1737928 lncRNA upstream 38462 12903831 ~ 12904177 (-) True G1518139
TU1737932 lncRNA upstream 57708 12923077 ~ 12923360 (-) True G1518143
XM_036951344.1 mRNA downstream 118 12857249 ~ 12862211 (-) True LOC110512308
XM_036951345.1 mRNA downstream 156 12857249 ~ 12862173 (-) False LOC110512308
XM_036951342.1 mRNA downstream 8549 12850090 ~ 12853780 (-) True LOC118936561
XM_036951343.1 mRNA downstream 17887 12840194 ~ 12844442 (-) True LOC110495524
XM_036951340.1 mRNA downstream 24497 12833642 ~ 12837832 (-) True LOC110495527
XM_036951357.1 mRNA upstream 4071 12869440 ~ 12874056 (-) False LOC118941033
XM_036951358.1 mRNA upstream 4071 12869440 ~ 12874057 (-) True LOC118941033
XM_036951329.1 mRNA upstream 33422 12898791 ~ 12908643 (-) False LOC110495512
XM_036951331.1 mRNA upstream 33422 12898791 ~ 12910953 (-) False LOC110495512
XM_036951327.1 mRNA upstream 33422 12898791 ~ 12910954 (-) False LOC110495512
TU1737778 other downstream 261998 12583728 ~ 12600331 (-) False G1518019
TU1737781 other downstream 261998 12583728 ~ 12600331 (-) False G1518019
TU1737782 other downstream 261998 12583728 ~ 12600331 (-) True G1518019
TU1737645 other downstream 576697 12285078 ~ 12285632 (-) True G1517902
TU1737633 other downstream 599260 12260792 ~ 12263069 (-) True LOC110495544
TU1737893 other upstream 40842 12906211 ~ 12910842 (-) True LOC110495512
TU1737891 other upstream 106284 12971653 ~ 12976441 (-) True LOC110513917
TU1738554 other upstream 519387 13384756 ~ 13402621 (-) True bcor
TU1738815 other upstream 874082 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 1105712 13971081 ~ 13972289 (-) False G1518991

Expression Profile