RNA id: TCONS_00049233


Basic Information

Item Value
RNA id TCONS_00049233
length 274
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_024072
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 20997679 ~ 20998615 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATGCTGTTCTTGCAACAGCATTTTTATtagcaaaTTATGAACTTTAAACAATCTCAAATGTGAAAACTTACAATTCTAGTCAAAAATGAAGGACATAACTGCAAAattagcatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcactgtgGAGCTTTAGTTAGAATTACAGCAAAAAGTAAAATCTGCAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049232 lncRNA upstream 38097 20959183 ~ 20959582 (+) True XLOC_024071
TCONS_00049231 lncRNA upstream 126804 20853200 ~ 20870875 (+) True XLOC_024070
TCONS_00047760 lncRNA upstream 280714 20716226 ~ 20716965 (+) True XLOC_024069
TCONS_00049228 lncRNA upstream 888250 20103265 ~ 20109429 (+) False XLOC_024061
TCONS_00049041 lncRNA downstream 93628 21092243 ~ 21092575 (+) True XLOC_024074
TCONS_00047765 lncRNA downstream 105007 21103622 ~ 21105738 (+) True XLOC_024075
TCONS_00047774 lncRNA downstream 325973 21324588 ~ 21344673 (+) True XLOC_024079
TCONS_00049234 lncRNA downstream 499672 21498287 ~ 21499896 (+) False XLOC_024080
TCONS_00049235 lncRNA downstream 499673 21498288 ~ 21499623 (+) True XLOC_024080
TCONS_00047759 mRNA upstream 270692 20716176 ~ 20726987 (+) False XLOC_024069
TCONS_00047758 mRNA upstream 270894 20715950 ~ 20726785 (+) False XLOC_024069
TCONS_00047757 mRNA upstream 295755 20694177 ~ 20701924 (+) True XLOC_024068
TCONS_00047754 mRNA upstream 642196 20272145 ~ 20355483 (+) True XLOC_024065
TCONS_00047753 mRNA upstream 771277 20216159 ~ 20226402 (+) True XLOC_024064
TCONS_00047761 mRNA downstream 48241 21046856 ~ 21061911 (+) False XLOC_024073
TCONS_00047762 mRNA downstream 55450 21054065 ~ 21057378 (+) True XLOC_024073
TCONS_00047763 mRNA downstream 100060 21098675 ~ 21115213 (+) False XLOC_024075
TCONS_00047764 mRNA downstream 100375 21098990 ~ 21115032 (+) False XLOC_024075
TCONS_00047766 mRNA downstream 178322 21176937 ~ 21253049 (+) False XLOC_024076
TCONS_00047756 other upstream 393667 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047755 other upstream 405082 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047732 other upstream 1223004 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047707 other upstream 1505059 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047695 other upstream 1885871 19095302 ~ 19111808 (+) False XLOC_024035
TCONS_00047785 other downstream 1227187 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047798 other downstream 1588681 22587296 ~ 22594781 (+) False XLOC_024094
TCONS_00047805 other downstream 1731792 22730407 ~ 22849186 (+) False XLOC_024096
TCONS_00047842 other downstream 2547964 23546579 ~ 23546696 (+) True XLOC_024119
TCONS_00047848 other downstream 3052433 24051048 ~ 24052227 (+) True XLOC_024124

Expression Profile

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