RNA id: XM_036951319.1


Basic Information

Item Value
RNA id XM_036951319.1
length 3037
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110495506
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13084843 ~ 13101678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGCACAATAGAAGTTGATCCCTGGGCTGGTTTTCAGTTTATAATATGCCTCTTCCCGTCTGCCCTGCCTCATTCCCCTTCAGATCTGAGACCACTGGATAAATGTAAGCAAAAAGGGAACATTATTTCTGACATTTGCTTTCAACAGACGCCCCAGATGTGCGAGGGGGACTGAACAAATGACACAGGGGAGGATGCGACTCGAATCAAAATGAAACGCAGCCTTGGTTGCTACAGGTGAAATTTTGTTTACATCCGGGTTGTTTCGGACGaaaacaacacacaacacgcatAGAAGCAGCTAACCCTGTGTAGTGTAGTTGCTAAGCCGATTTGACACTACGATGGCAGGGGAGACAGAAGACGAGATACCTGAAACGGGAGCAGTCTTCACCTTTGGAAAAAGCAAATTTGCAGATAACGTCCCCAGTAAATTTTGGCTGAAAAATGATGTACCTCTGAAAATCACCTGTGGGGATGAGCACACAGCATTGATAACAGagaATGGCAAGCTTTTCATGTTTGGCAGTAACAACTGGGGTCAGCTGGGTTTGGGATCAAAGACCATGGTGAACAAGCCCACTTGTGTGAAAGCTTTGAAGTCTGAAAAGGTGCGGCTTGCAGCCTGTGGAAGAAATCACACTATAGTTTACACTTCTCGGGGAAACGTGTACTCTACCGGTGGAAACAATGAAGGTCAGCTAGGTCTGGGAGACTgtgaggagaggacagccttccaATTGGTGGACTTCTTCAGTTCACATGGACCAATCAAAATGCTTGCTGCCGGCTCCAACACCTCTGCTGCCCTCACAGAGAGTGGGACGCTGTTCATGTGGGGTGACAACACTGAGGGGCAGATCGGCCTGGGGAAGGAGAGCAGTGCCCTGACCCCCCAGGAGGTCACTGTGGGTCGGCCAGTGGCCTGGGTGTCCTGTGGGTACTACCACTCTGCCTTCGTCACTGTTGACGGGGGCCTGTACACATTTGGGGAGTGCGACAGCGGCAAACTGGGCCTGGCCACGGGTCAGCTCGATGGACACCGCATGCCCCAGCTGGTGAAGGGCATCACAGACCAGGTGACCCAGGTGGCATGTGGAGGCGGGCACACCGTGGCTGTGACAGAGGAGGACCTGTACACCTTTGGCCTGGGTCAGTTTGGTCAGCTGGGCCAGGGGACCTTCATCTTTGAGGCGAGGCTGCCCAGAGCGGTGGATCACTTCAGGAAGGGCCGAGTACGACAGGTGATGTGTGGGGAGAACCACACTGCTGTCATCACAGACAATGGTCTTCTCTATACCTTTGGGGACGGGAGACATGGGAAGctgggtctgggagaggagaacTTCACCAATCAATTCAAGCCCACTCTCTGTCCACGCTTCCTCAAGTACAACGTCCAAgcgGTGACATGCGGAGGTTGCCACATGCTGGTTCTAGCCAAGCCCAGAGACAAGAGCTGTCAGGAAGTGACTCTGGAGGAGAATGATGTCACAGAGGACTACATGGAGAAGTCCTACACAGAGCTCTTAGGGGACACCCTCACCTCCACCCCTGCTATCCTGAACAGTAGCCTCTCTGCCCgggtcaggaggagagagaggGAGCGTTCCCCGGAGCAGTTTGGGCTCATGTTCCGGACCCTGCCCCCCCTGACGTCCGGACACCTCAATACCTCCGCACCCCTGCCCGTGTCCAGCCAGACCATCCCCTCCAGTCTGCCCCCCAAGGAGCTAACCAACAGAAAGGTGCACAACGGCATTCACCAACACAGGAGCACTGGGTCTAACAAGAAGGAAAAGAGGTCAGCTGAGAAGGGAAGGGATGAGGGAGACAGCAGCACTGTGGAGAACATGATGGACAACGAGAGTGTTAAAGATCTGGGAGACACCACGGACTTCCTCAACATGACTCATGTGATGAAAATGGACCCCAGTGACAAGACGTTGATGTTGTCCCCTGTACAGAAGGATTTAAGAGCTGAAGAGGGGGAAGGACAtaaggatgaagaagaagaagaagaagagaaggaggagaacaacaaagcagaggagaaagagaaatcTGAGGACATGGAGGGACAATCATTACAGGGTCAGTCCACAGCAGAACCCGTCCAGGGACCAGAGGGTGTGAAAGAAGAAACTCTCCCAGACGGTGGGCAGAAAGTTGCAGAGGACTCAGGTCAGCCCAGTCCTTTGGCTCCGACAGAGGAGAGCTCTGCATCCAGCACTCAGCTGCAGAATCGAACAACAGAGGAGAAACCCAAGAATCAACCAAGGACCAACAGAAAGCTGTTGCTGTTCAAACGCCTGTCCTCCTCCAAAGCCAAGCAGACAGAGGACAGTGCGGAAGCCCCAGCAGAGGGCACCGGCATGGGGGAGCTGCCTGCCAGTGCCAAGGGTCCCTCTGCAGGGCTGGAGAACAGAGATCCATCAGAGACCAGCGCTAGTGGTGCCCAGCCCCCTCTGAGAGCACCCTCGGACTCTGGTGGTAGAGGTGCCCGCTCTACCACCTGCACCCTACTGTGACGCCACTTATTGGGTGTTGGAGAACTGGACTGGCAGCGCCAACAACCAATAAACCCTTGAAGAGGATGCACATTGACTGTACACAACAAACAACCACTCCACTTTGAACACTAGCGAACTTCTCACAAAGTGACCTATTTATTGACATTCAGTTCCCAAACTTCCCATATGCGAAACGTGTATTATAAATGTGTATTATAAATGTGTATACTTGTATTTAACGTGCGCAAAAATGTCTTTAATTAACCACAGTGTGTTTTGATTGTGTTTTTATAACGTAGTTGTGTGTGTTAAACTGTGAGGATACACTATTTATTGCTGACTGAAATATCCCAAATGCACAATTGCACTTTAAATGTAGCCTTATTGTGTGTTTTTCAGGGAAATATgacatctgtgtgtgttctgatatGTTATTTTCATCGTCTCATAAACCGTTTGAACTTGGTGCTGGTGTGACAATCATCTCATGATTTGGATACTAGTAAAACAACTTTATGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737970 lncRNA downstream 30808 13053727 ~ 13054035 (-) True G1518178
TU1737968 lncRNA downstream 32047 13052597 ~ 13052796 (-) True G1518176
TU1737966 lncRNA downstream 35648 13048831 ~ 13049195 (-) True G1518174
TU1737964 lncRNA downstream 37735 13043899 ~ 13047108 (-) True G1518172
TU1737963 lncRNA downstream 41338 13043243 ~ 13043505 (-) True G1518171
TU1738018 lncRNA upstream 51352 13153026 ~ 13153398 (-) True G1518216
TU1738019 lncRNA upstream 56064 13157738 ~ 13158042 (-) True G1518217
TU1738030 lncRNA upstream 77532 13179206 ~ 13184410 (-) True G1518225
TU1738032 lncRNA upstream 80850 13182524 ~ 13184160 (-) True G1518226
TU1738036 lncRNA upstream 91614 13193288 ~ 13194631 (-) True G1518229
XM_021570798.2 mRNA downstream 113 13081819 ~ 13084730 (-) False LOC110495504
XR_005037323.1 mRNA downstream 113 13081819 ~ 13084730 (-) True LOC110495504
XM_036951305.1 mRNA downstream 53522 12933662 ~ 13031321 (-) False LOC110513917
XM_036951303.1 mRNA downstream 54492 12933662 ~ 13030351 (-) False LOC110513917
XM_036951304.1 mRNA downstream 54492 12933662 ~ 13030351 (-) False LOC110513917
XM_036951880.1 mRNA upstream 210954 13312628 ~ 13402659 (-) False bcor
XR_005037377.1 mRNA upstream 304740 13406414 ~ 13409467 (-) False LOC110495500
NM_001124414.1 mRNA upstream 319708 13421382 ~ 13439064 (-) True cd80
XR_002469429.2 mRNA upstream 364230 13465904 ~ 13470070 (-) True LOC110495499
XM_021570770.2 mRNA upstream 583532 13685206 ~ 13699630 (-) True LOC110495493
TU1737891 other downstream 108402 12971653 ~ 12976441 (-) True LOC110513917
TU1737893 other downstream 174001 12906211 ~ 12910842 (-) True LOC110495512
TU1737778 other downstream 484512 12583728 ~ 12600331 (-) False G1518019
TU1738554 other upstream 283082 13384756 ~ 13402621 (-) True bcor
TU1738815 other upstream 637777 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 869407 13971081 ~ 13972289 (-) False G1518991
TU1739561 other upstream 1383005 14484679 ~ 14486096 (-) True G1519529
TU1739599 other upstream 1404726 14506400 ~ 14507318 (-) True LOC110495482

Expression Profile