RNA id: TU1738554


Basic Information

Item Value
RNA id TU1738554
length 1317
RNA type TUCP
GC content 0.51
exon number 3
gene id bcor
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13312628 ~ 13402659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGGCGGTAGTTGTGAGTGCTCTGAATGGTGCCATACGGAAGAAAACGGAACAGTAAAACTAGGACGAAATAAAAAACTAATGGGAACATTGACAGAAACACCCTAGCCTCTCACTGAAGATAATGGGCACTGTTAGCATTCTTTATTTGTTGAAAACGGAAATTCTCGCCATATTTTTGAGGTGGCGTGTGTGCTGTATTGCGAGCTCAACATGGCGCTGCAATGCATAACCAGACTGAATATATTTATTGTTTATTGAGACCTACGACCGTTGTTGCCACCTGTGCTCCTTGAAACATTCACGACAACGATGCACTTGGTGTCTTTTTACTAATGGATATATTCACTGGGGGCAGAAACGTAACCTATCACTGCGACTCCGTGGATCTGTTCGTTCATTGTCGCGGACTCGTCATTCCCGGAGTTTTACCAACTGGAAATGTATAAAGACTAAGGATGTTTTCGTAGTCTAATCTTACCTACATGTCATTTAACAAGCACAACATTGTCACCCCTATTTGCTGTAAAGTTAAATTACAAAAGTGATATTAACCCCCGACGCACGAACTCTCGTTGGGTCGTTTTGACTGACTCGTGGATCCTAGAGAACACGGCCAAAAAGTTCCAACTGGACATTTTGCGTTTTGGCCAAGGACAATATAATTTAGAGAAATTATTCTGGAATTTCTATCAGGATTGTTCCAGTGAGGGATGGTGGGAGGCAGACTACCCATGTGGATCTAACCATCCAGGAACCACCACATCACACAAAGCATGGTGGATGCGAGTGCTGCTTGCAGAATGAACCCGCTAGCTGCCCTGGGCATGGACCGTAGCAGCCTGATGAGGGAGAGCCTCCGCGTCCACGGAGGGATGGTCTACCCGGGCATCCGCACCTTGTCCGCCTCCGAAAAAGCCAGGGAGGGGGTCTCCTCCTTGCCCCTGGGCTACGATCTAGTCTACAAACCCGAAGGGTTGaccttggatggcaggaagcctggtaACGGTTATGTGGGTCTGTATAAGAGCTCTCCCCCTGGGTTGCAGAGGcctggtggaggaggggagggcctGGGAATGGAGCGGCGTGTGGGGCCTGGAGATAAACCCTCTGAGCTGGGCCTCAACGGCAGCAACGGCTTCCTGCGACTGCCCTGGGCAGTAAACCCGTACGCGGACCCCGGACTGTACCCCTTCCTGGACTCCTCAAAATACGCAGCCCTCAACATGTACAAGGCCTCGTTCCTGTCCCAGCCCTCACCCTACCTGCCCCAGCACCTGGCCTACCAGTCCCTGTGTGGAGGGGCGGGGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738095 lncRNA downstream 84887 13299637 ~ 13299869 (-) True G1518287
TU1738080 lncRNA downstream 101093 13283327 ~ 13283663 (-) True G1518273
TU1738058 lncRNA downstream 153072 13231409 ~ 13231684 (-) True G1518251
TU1738036 lncRNA downstream 190125 13193288 ~ 13194631 (-) True G1518229
TU1738030 lncRNA downstream 200346 13179206 ~ 13184410 (-) True G1518225
TU1738620 lncRNA upstream 6381 13409002 ~ 13409398 (-) True LOC110495500
TU1738630 lncRNA upstream 13406 13416027 ~ 13481973 (-) True G1518706
TU1738641 lncRNA upstream 47494 13450115 ~ 13451916 (-) True G1518716
TU1738661 lncRNA upstream 81223 13483844 ~ 13484331 (-) False G1518735
TU1738663 lncRNA upstream 81223 13483844 ~ 13484331 (-) True G1518735
XM_036951320.1 mRNA downstream 283078 13085376 ~ 13101678 (-) True LOC110495506
XM_036951319.1 mRNA downstream 283082 13084843 ~ 13101674 (-) False LOC110495506
XM_021570798.2 mRNA downstream 300026 13081819 ~ 13084730 (-) False LOC110495504
XR_005037323.1 mRNA downstream 300026 13081819 ~ 13084730 (-) True LOC110495504
XM_036951305.1 mRNA downstream 353435 12933662 ~ 13031321 (-) False LOC110513917
XR_005037377.1 mRNA upstream 3793 13406414 ~ 13409467 (-) False LOC110495500
NM_001124414.1 mRNA upstream 18761 13421382 ~ 13439064 (-) True cd80
XR_002469429.2 mRNA upstream 63283 13465904 ~ 13470070 (-) True LOC110495499
XM_021570770.2 mRNA upstream 282585 13685206 ~ 13699630 (-) True LOC110495493
XM_036951889.1 mRNA upstream 304773 13707394 ~ 13711944 (-) True LOC110497005
TU1737891 other downstream 408315 12971653 ~ 12976441 (-) True LOC110513917
TU1737893 other downstream 473914 12906211 ~ 12910842 (-) True LOC110495512
TU1737778 other downstream 784425 12583728 ~ 12600331 (-) False G1518019
TU1737781 other downstream 784425 12583728 ~ 12600331 (-) False G1518019
TU1737782 other downstream 784425 12583728 ~ 12600331 (-) True G1518019
TU1738815 other upstream 336830 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 568460 13971081 ~ 13972289 (-) False G1518991
TU1739561 other upstream 1082058 14484679 ~ 14486096 (-) True G1519529
TU1739599 other upstream 1103779 14506400 ~ 14507318 (-) True LOC110495482
TU1740147 other upstream 1178348 14580969 ~ 14587559 (-) False LOC110495477

Expression Profile