RNA id: XR_002469429.2


Basic Information

Item Value
RNA id XR_002469429.2
length 1615
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110495499
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13465904 ~ 13470070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTGTGTTCAGTCAGATGTCTGTTAGAAGGAGGAAGTCAGTTCAGTCTCAAAGATTTATCACAGCTCTGAGGATGTCGAGGACTGTTGCCTGTCTGTTCTGTGTCTTAAAACTGTGTGTTGGAGCTGAGGCTTTGACAGAGACACTGGTAGAACTTGGACACAATGCAACACTGAACTGTTCCCTTAAAACTGTAACTGATGCACATTGGTACCTACATCGCCAACCACAGCCTCCACTGGCCATACTTCGCTCTTTCACTAGTAGGAGTCCTGATGCTTTTTATTACAATAAGAATTATAGACAGAAATATTCATTAGAAACAGGACATAGATTGTTAATACAGAATGTAACAGTAGATGATTGTGGAGTGTATTACTGTGCAAAGAAAGAAAACAATAGTTTCCTTTTCAGTAACGGCACCAGACTCATGACCCCTGTTGATCCTGAAGCAACAGAGCAACCCAGAGACTTCAACACAACATGGCTAAAGGGTCTTCTCATTGGATCCGCGGTCTTGAATGCAGTGCTCATTTTATTGGTGTCAGCCATTTCAGTGCTGTGGAAGAGAGTTGCTTGCCAGAAGAACCATGACTCTCCTCCAACCCCTGAACCACCTGAAAGGACAGACAGTCTAGAGTATGAAGTGATACAGCTGGTACCCCAAGCGAGAGGACTAAGGCCCGACCACATAGCCTCAACTATTTACTCAAGAGTCCAGTTTCCAAATCATGAACTCACAACTACTACTTAATAAGGTGCCAAATCTTGACTTTGATGGATAATGTGAACTAGAAAATGACTTTGGAAGATAAAGTGAATCTACTcataatattcatatttttgtGTAATGTATTTAGTGGTGCTCTTCGTCACTATCGTCTATATACCAGTCAGCAATATCTTTGAAGGAAATATCTTTGAAGGAAATTATTACTTTTGTGTCTTGATTCatgtttttcatttttcattgctGGAAATAAGTTCATATTTGCCTGTCTTGAAAGTAAACTGTTACTTTTTTTGTGAAGCAGTTAGGAAGAGGTTTGTGCATTTCTGTAGAAAAAGCCCCCAAGCCTTTTGTAGTGTATTGATGCTGCATCAACCACACATATCCTGTTTGTGAGCTAAGTTACATGTCCCAATTATTGTACAATAAACCATTTTTCATGACTTGTACAAGCTTTCAATTAGTTCATTAGAAAGCCTACTTCATGTGCCCCACAACACCTTTCTGAGTAGAAGGTAGTGTCACAACTTCTGCCGAGGTCGGTCccgctccttgttcgggcggcgttcggcggttgacgtcaccggtcttctagccatcgtcgctCAACCTTTCAGTTTCCATTTCTTTTGTCTTGTTTACCTGGTTCACATTCCCTCATCATATTAAATGTATATTACcatctgtttcccccatgtctgtgtgtggaattgatCTTTGTGTAGGGTGTTACGCTACAGGCTGGCTTGCGctaggtttgtttgttttgtttaacccGGTTCATGTTTTCAATAGCTTTTCTTGCTCTGCCAGAGATGCCAGAGATGAATTGACAATCACCACTTCCTCTTTGCACAGACTTGCGCTTCATGTGGAAACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738641 lncRNA downstream 13988 13450115 ~ 13451916 (-) True G1518716
TU1738620 lncRNA downstream 56506 13409002 ~ 13409398 (-) True LOC110495500
TU1738095 lncRNA downstream 166035 13299637 ~ 13299869 (-) True G1518287
TU1738080 lncRNA downstream 182241 13283327 ~ 13283663 (-) True G1518273
TU1738058 lncRNA downstream 234220 13231409 ~ 13231684 (-) True G1518251
TU1738661 lncRNA upstream 13774 13483844 ~ 13484331 (-) False G1518735
TU1738663 lncRNA upstream 13774 13483844 ~ 13484331 (-) True G1518735
TU1738678 lncRNA upstream 28258 13498328 ~ 13499343 (-) True G1518749
TU1738700 lncRNA upstream 64827 13534897 ~ 13541351 (-) False G1518768
TU1738702 lncRNA upstream 67081 13537151 ~ 13541351 (-) True G1518768
NM_001124414.1 mRNA downstream 26840 13421382 ~ 13439064 (-) True cd80
XR_005037377.1 mRNA downstream 56437 13406414 ~ 13409467 (-) False LOC110495500
XM_036951880.1 mRNA downstream 63245 13312628 ~ 13402659 (-) False bcor
XM_036951320.1 mRNA downstream 364226 13085376 ~ 13101678 (-) True LOC110495506
XM_036951319.1 mRNA downstream 364230 13084843 ~ 13101674 (-) False LOC110495506
XM_021570770.2 mRNA upstream 215136 13685206 ~ 13699630 (-) True LOC110495493
XM_036951889.1 mRNA upstream 237324 13707394 ~ 13711944 (-) True LOC110497005
XM_036951412.1 mRNA upstream 260290 13730360 ~ 13778831 (-) True LOC110495492
XM_021570767.2 mRNA upstream 325339 13795409 ~ 13799998 (-) False LOC110495490
XM_021570766.2 mRNA upstream 325339 13795409 ~ 13800006 (-) True LOC110495490
TU1738554 other downstream 63283 13384756 ~ 13402621 (-) True bcor
TU1737891 other downstream 489463 12971653 ~ 12976441 (-) True LOC110513917
TU1737893 other downstream 555062 12906211 ~ 12910842 (-) True LOC110495512
TU1737781 other downstream 865573 12583728 ~ 12600331 (-) False G1518019
TU1738815 other upstream 269381 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 501011 13971081 ~ 13972289 (-) False G1518991
TU1739561 other upstream 1014609 14484679 ~ 14486096 (-) True G1519529
TU1739599 other upstream 1036330 14506400 ~ 14507318 (-) True LOC110495482
TU1740147 other upstream 1110899 14580969 ~ 14587559 (-) False LOC110495477

Expression Profile