RNA id: XM_036951901.1


Basic Information

Item Value
RNA id XM_036951901.1
length 5310
RNA type mRNA
GC content 0.51
exon number 29
gene id LOC110495480
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14530581 ~ 14578088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGAGTCTTCCATTTCTGGAACCGGAGAAGCAGCATCCCAGACAGCGTAAAAATTGGAGTAACGGTGCTCGGAGGAGACTGGAATACGAAATAATATAATTTTATTTTCAACATACCAACGAAATATACATGGATGCACATTTTACGAGATAAGCATGAAGGTCTTTGATTTAAAATCAGGTAGCTGCAACCTTGTTTTGCATGTGCGGTAATATTCCAAGACATATGTGATACGTTGGGTGTGCTCAGCGCGATAACGGCGCTAGCAAGCTATTTCAAACGGTAAAATAAATCCAGATTGCTAGGAGATAGCCAACCATTTtatagttagccagctagcttgcGGGGGAGCAAGCTGCCTACTCGGGCAGAGGCATCATCGGATGCATCGACCAAGAAGAGGCATCTGGTAGGCATTAACCGACAATACAATCTCGGGGCATGCAAAGCGGTGTGTTTTGTGCAAACGGGTGATAAATCCCGCGTCCTCGGCTCTGGTCGTGGGATTAACCAGccgggagagaaggagaaggtggGGCCGAGGAGTGTCAAAAACGGTCGAGCTTAACCCAGCGCATGTAGCTTGGCGCTCTAGCTAGCGGGCTAACATTACCTCTCCATCGGTTTTCCATTTGGGAAATTAATTTAGGAAACTAGAATTATTCGACCATTGCTGGGGTATTCCGTGGCagttccccctctcccccaacgAGGATCAGTCAGAGCTGTACACTTGAGGCCATTGGCTTCTCTACAAATAATACCGTGTGGGGCGATTTTCACGGGGGTAGCATCCCCGTTTGCTTTGGACCATGGCGGACGACGACGTGCTTTTCGAGGATGTCTACGAGCTGTGCGAGGTGATTGGGAAGGGTCCCTTCAGTGTGGTGAGGCGCTGTATCAACAGGGACACAGGGCAGCAGTTTGCAGTGAAGATCGTAGATGTGGCCAGTTTCACCTCCAGCCCTGGCCTCAGCACAGAGGATCTGAAGAGAGAGGCCAGTATCTGTCACATGCTGAAGCACCCTCACATCGTAGAGCTACTAGAAACCTACAGCTCAGATGGCATGCTCTACATGGTCTTTGAGTTACATAGTATGGATACAGCTGACCTGTGTTTTGAGACTGTGAAGCGGGCGGATGCTGGTTTTGTCTACAGTGAAGCTGTAGCCAGTCACTACATGAGACAGATCTTGGAGGCGCTGCGGTATTGCCATGACAACAACGTGATTCACCGTGACGTGAAGCCTCACTGTGTCCTGCTGGCCTCTAAGGAGAACTCAGCTCCTGTCAAGCTGGGGGGGTTTGGAGTGGCCATACAACTAGGAGAATCAGGCCTGGTGGCAGGAGGTCGAGTAGGCACGCCCCACTTCATGGCCCCagaggtggtgaagagagagccGTATGGGAAGCCTGTCGACGTGTGGGGCTGTGGAGTCATCCTGTTCATCCTGCTGTCTGGCTGCCTGCCCTTCTACGGTACCAAGGAACGCCTATTTGAGGCTATCATTAAGGGGAAATATAAGGTAATGAACCCACGCCAGTGGAGCCACATCTCAGAGAGTGCCAAGGACCTGGTGCGTCGCATGCTGATGCTGGACCCCGCAGAGAGGATCACTGTCTACGAAGCCCTCAACCACCCCTGGCTTAAGgagaggGACAGGTATGCCTACAAGATCCACCTGCCAGAGACGGTGGAGCAGCTGAGGAAGTTTAATGCAAGGAGGAAgctcaagGGGGCAGTGTTGGCTGCTGTCTCCAGCCACAAGTTTAACTCCTTCTACGGAGACCCACCAGAGGAGATGCCTGACTTCTCTGAAGACCCCACCTCTTCAGGACTGCTAGCCGCTGAAAgggcagTGTCCCAGGTGCTGGACAGCCTGGAGGAGATTCATGCTCTGACCGACTGCAGTGAGAAAGATCTGGACTTCTTACACAGCGTCTTCCAGGACCAACACCTACACACACTGCTGGACCTCTATGACCAGATCAACACCAGGTCGTCTCCTCAGATCAGGAACCCTCCCAGTGATGGAGTACAGAGAGCCAAAGAGGTACTGGAGACAATCTCCTGTTACCCTGACAACATGGAGGCCAAGGAACTCCGGAGGATCCTCACACAGCCACACTTCATGgccttgCTCCAGACCCATGACGTGGTGGCCCATGAGGTGTACAGTGACGAGGCTCTGAGGGTGACCCCCCCGCCCACCTCACCCTACCTGAACGGAGACTCTCCCGAGAGCACCAACGGAGACATGGACCTGGAGAACGTGACTCGAGTACGCCTGGTTCAGTTCCAGAAGAACACTGACGAACCTATgGGCATCACTCTGAAGATGAACGATCTGAACCACTGCATCGTGGCCCGTATCATGCACGGAGGAATGATCCACAGACAAGGTACGCTGCATGTCGGCGATGAGATCAGAGAGATCAACGGGATCAGCGTTGCCAATCAGACCGTAGAACAGCTCCAGAAGATGCTGAGGGAAATGCGAGGGAGTGTTACCTTTAAGATCGTACCCAGCTACCGGTCACAGTCCATGTCTTGCGAGGTATGGACCGATTCTCTTGTGTCTCTAGAAAATCAGAAAGAGTCCCCCGACCTATCCAGACAGTCGCCAGCGAACGGCCATGCTAGTGtcactagctccatcctgGATCTGCCCTCTACCATCCAGCCTAAAGGACGACAGATCTCCAGACCTGTCATCAAGGACAAAATGTCCATCAAGATCTACGTGCGTGCCCAGTTTGAGTACGACCCCGCCAAGGATGACCTCATTCCCTGTAAGGAGGCCGGGATCCGCTTCCGGGTGGGTGACATCATCCAGATCATCAGTAAGGACGACCACAACTGGTGGCAGGGCAAGCTGGAGAACACTAAGAACGGAACCGCAGGGCTCATACCGTCACCAGAACTACAGGAATGGCGTGTGGCGTGCATAGCCATGGAGAAGACTAAGCAGGAGCAGCAGGCCAGCTGTACCTGGTTTGGCAAGAAGAAGAAACAGTACAAAGACAAGTACCTGGCCAAGCACaacgcagTGTTTGACCAACTAGACCTGGTCACGTATGAAGAGGTGGTCAAACTGCCTGCATTCAAGAGGAAAACGCTTGTTTTGTTGGGGGCCCATGGAGTTGGCAGGAGGCACATCAAGAACACGCTCATCACGAAGCACCCAGACCGATTTGCCTACCCCATTCCTCaCACAACCAGACCTCCAAAGAAGGACGAGGAGAATGGGAAGAACTACTACTTTGTGACACATGACCAGATGATGCAGGACATCAGTAACAATGACTACCTGGAGTACGGTAGTCACGAGGACGCCATGTATGGCACGCGGCTAGAGACAATCCGCCAGATTCACCAGCAGGGTATGATCTCCATACTGGACGTGGAACCACAGGCACTCAAGGTGTTGAGGACGGCTGAGTTTGCTCCTTACGTTGTGTTCATCGCAGCTCCCACCATCACCCCTGGAATGAACGAGCTTCCCAAGTGGTGCAGGAAACTGCCTgATGACTCCCTCCAGCGGCTGCAGAAGGAGTCCGAGGGCCTCCAGAAGACCTACGCCCATTACTTCGACCAGACCGTCATCAACAACGAGATTGACGACACCATCCGTCTGCTGGAGGAGGCTGTGAACCTGGTGTGTACCACCGCTCAGTGGGTTCCTGTGTCCTGGGTTTATTAACCCCTGAACCCAGACCAACACCAAACTCTGACTGTTGTCCCCCATTCCCCAACAAACCCCGGTTTTCTTTTACAATGCATCTCTGTGGAACATCTCTGTGGAAACCGTGTGGATGAAGGAAAAAATGAATGAAAAAGGACTGATACCGCCTCTgaaacctcagtcagtcctcctgAAGAAAAACAGTGACTTCTGTcgtcttcctctccactccttactgaCTGCCTCAAAGGCACATcgttgtgtgtgtttatatatacatatacatacatatatatatatataatataaaaataaTGAATATGGTCCTGTTCTTAGAGTTGAAGgtggggatggagggggggggggggggacattttcTACCTTATTTCTTTTTGTATCGTTACAGCGACAGCTGTCTGAGGCGAGATAGTGAGGAGGACAGATGTGACACATGGTGATGAGTGTTTGTTGCTGTTTACTTTGTATAAGGCATTTCCTATGGTCGTCAGTCGGAAGCTTGCCGTGTGACCTCCTGACCCCTTACTCCTCTTGGCTGCCTCATACTCTTCGTGCTCCGCCCCTCAGAGACAGCGGAGGTCCCTCTCGCACAGTCGCCACTGCCGCAGTGACACCACGTCCTATTGGGCGGATAGAAAAGCACAGTGAACACCCCTCCCCCTAtcccttttattttatttatttcagagGTCACGGTATCTGTCAATCAAATCGTTGGAGCACCCCCCTGAACTCTCTTCATTCCCTACATACCCTGTTTGTTTACATCTCAGTTTGCACAATGGAGAGAACAGGTGCTCTCCcccctctgtttctttctctctctctttctctctgtaaagCGATGATTCTCCTCGGTCAGAGCGTGTGCTTGGTCACCGCCAAAGCACAGGTGTCCAAGCCAGAGGGCATCCCTCTTATCTGGATGGACGGACAGGAGAAGGGAAGAAAACAACATAATCCAACACGGTCACCCTGCATGCGGCTGGGGCAGAAGACTCTGACTCCTATGCACACCCCCCAGTCCTGCAGGCCCATAAGAGTGAGCCGTGTATGTAAATTGTCCCTATTTGATATGTTGTGGGAATGGGAGGGGATACGGAGTGGGACGTCCAATCCTATAGGTCCGCCATTTCAGAACTGTCGTCTTAAAAGAGTATTACTGTTTTAAGTTCAATGGAAGGAGATGCATTTTTATGGTGTGTAAATGTTTCAGTGGTTCGTAAGTCATATGAGTGATGCCAAGAGCCAGTGTGTGTATAATAATACTAAAAGAGCTCATTGTGACAAACTCTTTATAACACTTTACTTGCGGTGACATGACATAGCGCCTTATGAGCACTGTCGTAAAAAGGGCGTAGTGCCTGTCTGAACTGTCGTAGCATAAAAAAAGAAACTGCTTTGTCATGCTTCTGACAGTGTGTTATGTAGGGGTTATGTCTCTCTGCCTGGAGTAGAGTGTTACCATTTAAAGTCCTGTGTAAAGTTCCCTCTGCAAACGACAAGCAGCTCTTCGGTATGAAATGTTGTTCTTCTTCtgttttgtaaaaaatatatttcattttaAGTGTTGACAAAGTAAACTGCCTTTGGGTTCTGTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739621 lncRNA downstream 3067 14526975 ~ 14527514 (-) False G1519575
TU1739624 lncRNA downstream 3374 14526975 ~ 14527207 (-) True G1519575
TU1739619 lncRNA downstream 4915 14525381 ~ 14525666 (-) True G1519574
TU1739614 lncRNA downstream 15058 14515310 ~ 14515523 (-) True G1519570
TU1739570 lncRNA downstream 34656 14495694 ~ 14495925 (-) True G1519535
TU1740148 lncRNA upstream 2882 14580969 ~ 14587559 (-) False LOC110495477
TU1740261 lncRNA upstream 120633 14698720 ~ 14699356 (-) True G1520063
TU1740338 lncRNA upstream 232470 14810557 ~ 14811165 (-) True G1520128
TU1740342 lncRNA upstream 240761 14818848 ~ 14819608 (-) False G1520132
TU1740343 lncRNA upstream 240761 14818848 ~ 14820002 (-) True G1520132
XM_021570755.2 mRNA downstream 22989 14506227 ~ 14507592 (-) False LOC110495482
XM_021570762.2 mRNA downstream 656019 13865384 ~ 13874562 (-) True LOC110495488
XM_021570765.2 mRNA downstream 697175 13803381 ~ 13833406 (-) True LOC110495489
XM_036951891.1 mRNA downstream 713647 13803381 ~ 13816934 (-) False LOC110495489
XM_021570766.2 mRNA downstream 730575 13795409 ~ 13800006 (-) True LOC110495490
LOC110495477 mRNA upstream 2875 14580962 ~ 14587615 (-) False LOC110495477
XR_002469427.2 mRNA upstream 64988 14643075 ~ 14662564 (-) True LOC110495478
XM_036951413.1 mRNA upstream 94079 14672166 ~ 14740105 (-) True LOC110497004
XM_021570732.2 mRNA upstream 173498 14751585 ~ 14752539 (-) True LOC110495458
XM_036951917.1 mRNA upstream 206765 14784852 ~ 14792946 (-) False LOC110495456
TU1739599 other downstream 23263 14506400 ~ 14507318 (-) True LOC110495482
TU1739561 other downstream 44485 14484679 ~ 14486096 (-) True G1519529
TU1738967 other downstream 558292 13971081 ~ 13972289 (-) False G1518991
TU1738815 other downstream 789014 13739451 ~ 13741567 (-) True G1518858
TU1738554 other downstream 1127960 13384756 ~ 13402621 (-) True bcor
TU1740147 other upstream 2882 14580969 ~ 14587559 (-) False LOC110495477
TU1740149 other upstream 2882 14580969 ~ 14587559 (-) True LOC110495477
TU1740584 other upstream 697976 15276063 ~ 15277021 (-) True G1520339
TU1740777 other upstream 920821 15498908 ~ 15500444 (-) True LOC110495442
TU1741769 other upstream 969789 15547876 ~ 15548483 (-) True G1521308

Expression Profile