RNA id: TU1740148


Basic Information

Item Value
RNA id TU1740148
length 5073
lncRNA type sense_over
GC content 0.40
exon number 4
gene id LOC110495477
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14580962 ~ 14587615 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCATTTTCTCCAAAATGGCGGATCGCAAAGAAGATGACATCTTATCAGAAAAGGATGAGCTGGAGAGCGAGGATGACACCTATGAGGTGGTGGACCTGACAGAGTACGCCCGGAGGCACCAATGGTGGAGCATGATGTTTGGGAATAACTCTGGTCCCCTCGCAGAGAAATATACTCTGTGACCACGCAGATTGTGATGGGAGGGGTCACTGGCTGGTATGCAACCCAAATTGGGGTTGattttaattagggccaatttcaagttttcataacaatcggtaatcggcatttttggacaccgatcatggccgattgcgttgcactccacgaggagactgcgtggcaggctgactacctgttatgcaagtgcagcaaggagccaaggtaaggtgctagctagcattaaacttatcttataaaaaacaatcttaacataatcactagttaactacacatggttgatgatattactagtttatctagcttgtcctgcgttgcatataatcgatgcggtgcctgttaatttataattgaatcatagcctacttcgccaaacgggtgattaacaagtgcattcgcgaaaaaagcactgtcgttgcatcaatgtgtacctaaccataaacatcaacgcctttcttcagagtcagggtatatgcagcagtttgggccgcctggctcgttgcgaactgtgaagactatttcttcctaacaaagaaagccaacttcgccaaacgggggatgatttaacaaaagctaaTTTGCAAAAAAAGTATAATCGTTGcatgaatgtacctaaccataaacatcaatgcctttcttaaaaacaatacaagtatatatttttaaacctgcatatttagttaaaataaattcatgttagcaggcaatattaaacgagggaaattgtgtcacttctcttgcattcattgcaatcagagtcagggtatatgcaacagtttgggcagcctggctcgttgcaaactaatatgccagaattttacgtaattatgacataacattgaaggttgtgcaatgtaacaggaatatttagatgtatggatgccacccgttagataaaatacagaacggttccgtatttcactgaaagaataaacattttattttctaaattatagttttcggatttgaccatattaatgtcctaaggcttgtatttctgtgtgttatgttatcattaagtctatgatttgatatttgatagagctgtctgactgagcggtggtaggcagcagcaggctcataagcattcattcaaacagcactttcgtgcgttggCTTGCAGCTCTTcccaatgcttcaagcattgcgctgtttatgacttcaagccattcaactcccgagattaggctggtgtaaccgaagtgaaatggctagcaagTTAgtggggtgcacgctaatagcgtttcaaacgtcacttgctctgagacttggagtagttgttccccttgctctgcaagggccgtggattttgtggagcgatgggtaacgatgcttcgagggtgactgttgtcgatgtgttcctggttcgatgCCAGGTAGGGACGCACAGGTAGGGACGgaaactatactgttacactggcaatactaaagtgcctataagaacatccaatagtcaaaggtatatgaaatacaaatggtatagagggaaatagtcctataattcctataataacctcaagctaaaacatcttacctgggaatattgaagactcatgttaaaaggaatcaccagctttcaaatgttctcatgttctgagcaaggaacttaaatgttagcttttttacatggcacatattgcacttttactttcttctccaacactttgtttttgcattatttaaaccaaattgaacatgttgcattatttatttgaggctaaattgattttattgatgtattatattaagttaaaataagtgttaattcagtattgttgtaattgtcattattacaaataaatactttttttatttatttttttaaatcgtccgattaatcggtatcggctttttttggtcctccaataatcggtatggacgttgaaaaatcataatcagtcgacctctagtccctAGTGTTCCAGTCCGAGTCCTTTATTCTCGAGTCGAGTCACAAGTCCCTTGGTAGTGCTAAAAGCTGTGGTCCAACCATTTAAAAATCAAAATTCTCTTCAACTGTTGGCACATTTTAAGGATATCTCTAACATTTGCTGTTGTAGCTAGTAGGCCCCCTATTTTAAATTATGCATCACAGAGATTTTCTGACAAGAAAGTCACTTCTGGTCCAGTCCGAGTTGAGCCATGAAAATTGTGACTTGAGTCAAGTCTGAGTCCTGGACTCGAGTACTACAACACTGCTATCAgtcactcctctctctcacattcaGGTGTGCAGGATACTTGTTCCAGAGAGTAGGGAAGATAGCTGCAACTGCCATAGGTGGAGGGTTCCTGTTATTACAGATAGCGAATCACAGTGGCTACGTGCAGGTGGACTGGAAGAAAGTGGAGAAGGATGTGAACAAAGCAAAGAAACACCTGAAGAAGAGAACCAAGCAAGCAGCCCCTGAAATTAACTCCTTCTTCGAGGAGGCCACAGAGTTTGTCAAGAAGAACATTGTCCTGTCCAGCGGGTTTGTGGGTGGATTCCTCCTGGGCTTGGCCTCCTAAGGGCGTCGGGGCCAATTCACGACTGAGGAAGTCGTTACATAGGAAGAAGGAAGCTGTCATTACTGTGAACTGAGTCACCACACGGGATGTTGTCATTAACTGTGAATCGTTGTCTTTCTCCCAGCACGGAACTAGTCATGAAACGGGTTTGGGAGGAGGCTGAACATGTGAGGCTGACTCTTTATGCCCCCCTGGCTGCTCTCTTCCGTTACTGCCCAACTGATCAGAGTCTTGCTTGTCCACCCTCTTTTTATTCTATTTATCTGGTGGTTTCTGATCCAGGATCAGTTGTTTGGGCCTGTTGAATATGGAATTTTTATACTTCATAATCAGCACTACCCCCAACATCAATGTATGTGAAAATgtcatgtttctatgttttgaatcagctatattatatatatttatttgttcaCCGTCATATGGTGTGCATCATGTGATTTGAATCAATTACTGAgcaatgcctactcataattggttgAAATCACGATGCACACCGGATGATGCCATTACAAAAACTAATTTTGACTTCAAAGCATAGAAACGTGACATTTTCACATACGTTGATGTTAGGGTAGTTCTGGAGATGATGAATACAATGTTGAAAATGTTAGAAATGTCCCTTTAAGTGCACAACGCGACACCTCTTGATACACTATGATATACTactaatatactgtaccacaCACTGGACATAGGATTACTCGGCCCCTGTCTATCTGGGGCACTCTTTTACCTGGAAgaacaggtctaggatcaggaatgtgtcccaaatgctcatagtgcactacatttgaccagagccctatgtaggaaattagggtgccatttgggacactggcCAGCTCTCCCTATACTCAGACCAAAGTTTTACCACCCTGTGCTATTCAACAAAATGTGTCTGCAGACCTGTTGTTACGGGGTTAATATATCAACACCTGATCACTGCACCTTTGCTGGCtaatgtactgtaggtatatCAGTGTGCAGGTTAGCGTTTTTCATAAAGAATCTTGTTCTGGGGGCAGCTCTGCAgaatggtcactagctggcacagccacaaaatcTCATTTTAAATCTAACtgtaaccacactgttaaccctaacGCCTAACCTTAAATTTAGACCAACAAGTTTAATgtagttttcatgaatttttacaatatagccaattctgactttgcagctggcctatctagcAGATTTGCTTAGTTCTGCCTCCAGGTCAATATTCATTCCAAAAAATGTGAACCTGCTATTGGTGTAGTAATAGGAAAACATGTGATTTAGTCATGTGTAGAATATACTATCAGTTTTATAGATAGAAGGAAATGCACAGTATAAAGTCAGTGTTCAGTTGCTTATGAGTTGTTCCATATTGTGTCTTTAACTATTTAAATATTACTTGTCAGGGGTATGATTTTCCATTAGTTTCTATACTTCACCAAGTGCACATTAACTTCTTACTGCCATTAACCTCCATATGTTCTGACCTCCTGAATGCTATTTTGAAATATTGATAACCAACCAACCATAACTATGGATTTGTCTTATGCTTCTGTTTTGTCAAATAAAGTTGCCTGATTTTTGTTGGTTAGCAATGTTAACAGTTGTGTGTGTGGTCACTGGACTGCATGGCAGACATGCATACAATCAGGGCTTGGTGTGTACACTGAGTGGATTAACACTGAGTGGATTAACAGTCTATCTTGACACGTTTAACTTCTCAACAATATATTTATTTTGATTATTAAAGCCAGCATGACTTTAGTAGCTCTATGGCTGCCTTTACACAGGAAACCCAACTCCGATCTTTTACCAAATTATTGGTGTTTTGGCCAATCAGGTCAGATTTTTGCCAGTAATTtcggcaaaagatcagaattgggctgcctgtgtcagTGTAGTCTATGAGTTCCGGTAATGCAAATGTCCAGATGTTATGATGTGAATAGAAATGGATGCTTCCTTGTGTCAGCATGGAGGATGGGTTTGTAATAACCACCATGCATGTCACAGCAACAATGAATGAGCATTGTCACAATACTAAGATATTTCACCACTATGTCTCTGTATTCATCTACACTGTGAAATCTGCTTTTGAAAGGTTCTGCATGTAGAAAGAGACAAAGGAAGATACTCACCAAATCAATCTGAAATAAGTACCAATTGTCCATTTTTTTGTGTTTACCTCTGTCACAGAGTACAATATCAATgaacaaattaaatattttttggtTTATATTAAATGCACATTGAATTGGGGTTTAGTCCTGATAGGCTTTCTGTAGCTTGGGATTTAGTTCTGGGATATATGAAGTACTCTGTCAATTGACTTGACAAAAAAGctttcaaataaaattgtattgatTTATTGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740183 lncRNA downstream 15509 14565146 ~ 14565460 (-) True G1519996
TU1740172 lncRNA downstream 44329 14536117 ~ 14536640 (-) True G1519987
TU1739621 lncRNA downstream 53455 14526975 ~ 14527514 (-) False G1519575
TU1739624 lncRNA downstream 53762 14526975 ~ 14527207 (-) True G1519575
TU1739619 lncRNA downstream 55303 14525381 ~ 14525666 (-) True G1519574
TU1740261 lncRNA upstream 111161 14698720 ~ 14699356 (-) True G1520063
TU1740338 lncRNA upstream 222998 14810557 ~ 14811165 (-) True G1520128
TU1740342 lncRNA upstream 231289 14818848 ~ 14819608 (-) False G1520132
TU1740343 lncRNA upstream 231289 14818848 ~ 14820002 (-) True G1520132
TU1740366 lncRNA upstream 319853 14907412 ~ 14907611 (-) True G1520149
XM_036951895.1 mRNA downstream 2881 14530581 ~ 14578088 (-) False LOC110495480
XM_036951896.1 mRNA downstream 2881 14530581 ~ 14578088 (-) False LOC110495480
XM_036951899.1 mRNA downstream 2881 14530581 ~ 14578088 (-) False LOC110495480
XM_036951904.1 mRNA downstream 2881 14530581 ~ 14578088 (-) False LOC110495480
XM_036951906.1 mRNA downstream 2881 14530581 ~ 14578088 (-) False LOC110495480
XR_002469427.2 mRNA upstream 55516 14643075 ~ 14662564 (-) True LOC110495478
XM_036951413.1 mRNA upstream 84607 14672166 ~ 14740105 (-) True LOC110497004
XM_021570732.2 mRNA upstream 164026 14751585 ~ 14752539 (-) True LOC110495458
XM_036951917.1 mRNA upstream 197293 14784852 ~ 14792946 (-) False LOC110495456
XM_036951918.1 mRNA upstream 197309 14784868 ~ 14792946 (-) True LOC110495456
TU1739599 other downstream 73651 14506400 ~ 14507318 (-) True LOC110495482
TU1739561 other downstream 94873 14484679 ~ 14486096 (-) True G1519529
TU1738967 other downstream 608680 13971081 ~ 13972289 (-) False G1518991
TU1738815 other downstream 839402 13739451 ~ 13741567 (-) True G1518858
TU1738554 other downstream 1178348 13384756 ~ 13402621 (-) True bcor
TU1740584 other upstream 688504 15276063 ~ 15277021 (-) True G1520339
TU1740777 other upstream 911349 15498908 ~ 15500444 (-) True LOC110495442
TU1741769 other upstream 960317 15547876 ~ 15548483 (-) True G1521308
TU1741790 other upstream 1015278 15602837 ~ 15603905 (-) True LOC110495443
TU1741859 other upstream 1098342 15685901 ~ 15759234 (-) False G1521387

Expression Profile