RNA id: XM_036951927.1


Basic Information

Item Value
RNA id XM_036951927.1
length 8304
RNA type mRNA
GC content 0.51
exon number 35
gene id LOC110495438
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14907954 ~ 15133334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGGCGAGAGGAAAGAACAACGGACACATCATCAGACACTCCACACCAGGCTTCCAGCCTGTTCtcttgacatattatgacatgacCCTCAAGCGTGTTGCTTCTGGCTATAGACGAAGCATTCAGTGGTGTGTTTTCCTTTCCCCTAATCTTGCTGTCCGAAGGATTTTGTCAAGAGAAAGCCTTCATTTCTGAGTTGTTGTCTACTGGACAGAActgaggaaaggacagagatctAATAAAGGCAATGCTGTGTGTTTGGACTATCTGGGCTGGATGAGGGCTATTGGATCAGCCAGTGCTGCACCCCCTGCTATGCTAGTCTGGCTGCCTGAGGAGTTGGAGAGTGTCCACACACACAATTTCAAGCTTAAGCCCTTCAAGAAAGTCAAGAGCTGTGATGTATGTCAGCAGGCCATCACCAAGGATGGACTCATCTGTAAAGTGTGCAAGCTGGGCATCCATAAGAAGTGTGAGGTGAAGgtCCTCGCAGATGCATGTGTGGCACCTACCGGATCACCTACCAAGCCGcCGTCCACTGATCCTCCTTGGAGGTCAGTTGCTTCACTTAATTCACGGccGGCCACTCCTCAGCTGCCGTTGAAGCATGTAGAAACTCCGggAACCCCAAGGTCCTGTAAGAGTGAGCAGACTAGACGAAGGCCATCACGgagTATCAGTCTGCTGCAGGCCATGGATGAGAACTATGAGGTGGACCTGGTGTACATCACCGAGAGGAtcatctctgtctccttccccaGCGGAGCGGAGGAGCGCAGCTACACCTCCAACATCAAGGAGGTGGCCTCCATGCTGGCCTCCAAACACGGGGAACACTATCTGCTCCTCAACCTAAGCGAGCGGAGGAATGACATCACCAAGCTTAACCACAagGTGCTGGAGTTTGGCTGGCCAGACCATTATGCTCCTGCCCTGGATAAGATCTGCAGCATGTGCAAGGCCATGGACACCTGGCTCAACGCTGACCAACACAATGTAGTGGTGCTTCACAACAAGggGAACCGTGGGAGGACAGGAGTGGTGGTGGCTGCCTACATGCATTACAGCAACATATCAGCCAGTGCTGACCAGGCACTGGACAGGTTCGCCATGAGGCGCTTCTACGAAGACAAAGCACTTCCTGTGGGTCAACCGTCGCAGAGAAGgTATGTGCGTTACTTCAGTGGTCTGCTCTCTGGCCACATCAAGATTAACAACAAGCCTCTGTTCCTGCACCACGTCATCATGCACGGCATTCCCAACTTCGAGTCCAAAGGAGGCTGTCGTCCTTTCCTGAAGATTTACCAGGCGATGCAGCCAGTCTACACATCAGGGATATATAACGTACAAGGGGACAGTCACACCAGTATCTGCATCACCATTGAACCTGGCCTGCTCCTAAAGGGGGACATTTTGttgaAGTGTTACCACAAGCGTTTCCGGAGCCCCATTAGGGATGTGATATTCAGAGTGCAGTTCCACACCTGTGCCATCCACGACCTGGGAGTGGTCTTCGGGAAGAATGAACTGGATCAGACttttaaagATGAGAGATTTCCAGAATATGGGAAAGTGGAATTTGTCTTCTCCTTCGGACCTGAGAAAATCAAAGGTACAGGAATGGGCCACCTTGAGAATGGCCCACAAGTGTCGGTGGACTACAATACCCAAGACCCCCTCATCCGCTGGGACTCCTACGAGAACTTCAACAGGGGCTGCGAGGATACAGGAGATGaCGTTGTTCACACCCAAGGCCCCCTCGACGGCAGCCTGTATGCCCGAGTCCACAAGAAAGAGTCCCTCGATGGAGTGGTCACAATCAACGGCCTTCCCGTCCTCGACCACCCCCTAACCAACGCAGACCACACCCCCCAACACCCTGACCACACCCTCACAAGTTCTGACCGCACCCTCCCGGTAGTGGGCCACGCCTCCCTGCCCGCAGTCGACCACGCCCTTTCAGTCAGCAGCGACTCTGGAAACTCGACAGCATCCGTCAAAACCGATCGCACCGATGACCACAGTCTGTTGCTGCATGGAGCGGTGAACACCAACCAGAACCACAACACGCCCAGTCATCCCCCTCTCAGTCCccaggagaagagagagttggACCAGCTTCTGAGTGGCCTTGAGGCCCCCATGCTCCACCGCCAGGCCTACCTGGCTACCTCCACCAGCCCCGGGGGGGGAGTACGCCACCTTGTCCCAGCCCAGGTGCACGTCAGCGGGCATACCCGGCTCATTGCAGCCCCCTCCGCCGAAGAGCGCGAGACGGACATATTGGACGAGGAGCTGCACATCAGTCAGGAGGGTAACAGCGTGGACAGTCTTGGAACACTCTCGTCATTGGAGGGCCAGGCCACGCCCGCAGAGCTGTACTACCAATCACAGATACCCATCAACAGGCAGAACAACGGGCCATACCTAGAGAAGCTACGGGAGATGCCGGTGCACCGGGTACGGACTTCTACGTCGGCACAGGAGCGGATCATGGACTCCAGTTCGCCCCAGGAGGAGGAGTACTCTCCTAACAGTTACCAGAACGGGAGTGTGCAGCGTTCCCAGTCCTTCGGGACCCCGGAGCCTGGAGGCCCCAAGCTGCCCAGGGCCCCTGAGAGAAGCACCAGTAGCAGGGAGGCAGTCCAGAGGGGGCTGAACGCATGGCACCAGTACAGTCTGCCAGACGACCCCTTCGGTCCTCCCTTACAGAGCACCCACAGTCTGCCCCACTTCCCCCCCACCGCCTCTCAGCACGACATAGAGCAGTCTATCGAAGCCCTCGACATGCTGATGCTGGATCTGGACCCACACACAGGACAGGTTCCCAAGTCCTACAGCGCCCCCTCTGGTGAGAACAGTGTAGGAGGGCCAGCCCAGATCCCCTTCTCCCAATCTCTGGCCAGGCCGTCCTACCAGGCAGACTCAGCCATCCATGGCTATAACATTAACTACAATGCCTTCGGACAGCCTCTGAGGTCGACGGCTGGCCGGGTTTCAACGTCGCCCATCCAGAGTCCTGTGGCTGAGTCTCCCCTGTCGTATGCCCCCCCGAGGTCCGCCTCGTACCAGCCCCATACAAACACCACTCCCATACACCCCCCCGAGCCCTACCACATGCACCCAGCCCAGGGGCCTGGttcccccctctacccctctgacTCCTCCCCCATCTTCGGACAGCTCCAGATGAAGCCCCTGAACTCGTACCCAGGTGGGACGGTGGTGTCCCACTCCCCAGACCGCAACGGAGGGTCTCCCTATCATGGCTAcagcacctcctcctcccccctccacaacTCTTCCCCCCTTCTCAAGGAGCCAGAACCTGAGGAGGAGAACCTCAACCTGGAGGGCCTGGTGGCTCAACGCATCGCTGAGTACAACGCTCGTATTCAGGGCATCAACGAAAGCATTTCCACTACGCCACAATCTGACCTCCAACGCTCTTATTCTTTCTCtgGGATGCGTTCCCGTGGGATGACGCCGGAGGAGGCTAAGGAGACCGTCCGCCGGCGGACCACTAGCGAGGGGCACTACCACAATGAGGACCCTCCAGCCCACACGGGGGCGCCGGTGCGCTCCCCTGTCCACTCGTCAGACTTCCACATCCTCAACCCTGGAGGAAGACCCAGAGAGGGCCCCATGCACAGCTACCGCGAGGCGTATGGGGATGATGATGCTGACGGTCGGGCTTCTGTCAGTCCTATGTTCAGCAGTGGTGGTGAGGCCCACCCCCTGACCCCTGCCTTCCCTGTCTCACCTCAGACCCCTTACTTCAACATGTcccgtTCTCCTCCAGGCTTGGCCAAAACCCCTCTCTCTGCTTTAGGACTGAAGCCCCACCACCCAGCAAACATTCTCCATGGTGGATcagACTGTGAATCTGTCAGCGACGAGGAGCAAGACGGCCGTGGTTATGGTGGACACCCCCTAAATGATCCTATATCTTCCAGTAGTCCCATCCACAGCCCAGACGGcatgaGGATGACTTCCTCCATTCGGCTCCAGGCTGACTCCGGCTTCCCCTCCCACCCCTTGGAGAGTACCCAGCACACCCCCGTTCCGTCCTACAGCCCCCACTCCCCTGAGGGATCCCAGGTCAGCGTCGTGGGCCCCCTCCACACCGTCCCCGGAAGTCCCAACACACTCCACCGCACGGTGGCCACCAACACCCCACCAAGCCCCGCCCTCCAGCGCCGCCTGGCCAACCAGGCCAGCCCGGGTCTGGCTCGTCACCCCACACCGcccaatggaaacagggtgcaagTCCCTGGCAGCCCTGTGATCCCCTCAAGAGGCTCCAGAACCGCCGCCGTCCCTTCTAGCCCTATGATGGGGCGCCACCCGATGGCCGGTGGCCACACTACACCCGATGACAGACAGGGGGCACCACCCACGCCCTCCTTCCCAGTGTCGCCCCAGCCGATGCTTCCAGAGAAGAGGCGGATGCCCAGTGGAGAGAGGTCCAATGTGGGGCTGTCGTATGGGACTCTGGATGGGAAGACCACCATACCCACCTTACCCAGTGGAGGCAGCACGCCCAGTGTGTCCACCTCTCACACCCTACCCGACCTCTCCAAATTCTCCATCTACGACCAGAGTCCAGACATCAGGCTGAACGTGAAGTTTGTCCAGGACACGTCTAAGTTCTGGTACAAGCCAGACATCTCCAGAGAGCAGGCCATCAGTCTGCTGAGAGACAGGGAGCCAGGGGCCTTCGTCATCAGGGACAGCCACTCTTTCAGAGGGGCCTACGGCCTGGCCATGAAGGTGGCCTGCCCACCTCCCACCGCCCAGGCCAACAAGAAAGTTGGTGACATCACAAGTGAGTTGgtgaggcacttcctgattgagaCGAGCCCCAAAGGCGTTCGTCTGAAGGGCTGTCCCAACGAACCCTACTTTGGATGTCTCTCTGCCCTGGTGTACCAACACTCGATGACTCCTCTGGCCCTGCCCTGCAAGCTGATGATCCCCAGCAAAGATCCCAATGAGGAGGCCCTGGAGCTGGACACTCCCACTGACACAGTGGCCGAGCTGGTGAAACAAGGAGCAGTAGCACAGCAACAAGTCCCCGAGGAGGCCCATGCATGCAATGTTCTTTACATCAGCTCTGTGGACATGGAGTCTCTGACCGGACCTCAGGCCGTCGCCAAAGCAATCAGCGAAATGGTGGCCGTCAACCCGTTGCCCGCGGCCACAACCGTCCACTTCAAAGTGTCGTCGCAGGGCATCACCCTCACGGATAGCCAGAGGAAGGTCTTCTTCCGAAGGCACTACCCAATCAACACTGTCACCTACTGTGACATTGACCCCCAGGACAGGAAGTGGAGCAAGGAAGGAGGTGGAACGGCAAAACTGTTTGGTTTCGTGGCACGTAAACAAGGAAGCACAACGGACAATGTCAGCCACCTGTTTGCCGAGTTGGACCCCGACCAGCCTGCTTCAGCCATCGTCAACTTCGTCTCTAAAGTCATGAGGCGATGAAACCAACGAACCCCCGGCAGTCATTTTTTTGTTCTTCCATTTATTTTCTTAATTTTGGATTGTGTTTCATTATTTTCTTCTGTTCTTTTTGTTGAGATATGTTCTCTTTGTTTTATTCTGCGAGATTTTATGTCTGAAGGACTTGGAGGTAATCCAAGATGGCGCCAGAGGAAGTTGTGGCTGGAGTGGTGACAGTGATAATGTGTCTCGAGCTGGTGGAGGAAGAAGGTTTCGTCAACAGGGTAACTGTGGAAGTCCAAGTGGAGAAGCTGTGTGCTAAACTAAGTATCAGTGGGAGaaaaggacactgacatttaTCAGGTTTTCGGATTGATTTACCAAAGGTAGCACTCAGAACAAGTATGTCATTATTAGATGGTCAGTTTAAGGCGTTGTAGgttttctgtttttcttttttacaATGGGACTGTTGATTGAAATGAAACAGACAAAAACAGAAAGAATGCTTTCTGCTTGATTCTGTCTTCAGAAAAATAGTTTGCCTCAGTGGCTTCTTACTAAAGAATATTTAAGAAGACATTTTGCATGTTAGCTCGATCTTTAAGCTTGGTCCACTAAAGTCATTTGTGAACCCTCGAGTGGACATTTCCCAGGCCTGTTGTATGTTGTAAAGGGCTCAACAGCGAGAAAAATAAACTGTTCTCAACTTCACAGAGCAGATCAACCTTCTCATAAAACACATTGCTTATGTTAGGTCCAGACTTGACCAGTCGATCCTGGAGCGCACTGATTGATTTCAGATGTGGGAGATGGATTACTCTGGCCTGTGGAAAGGTAGCTGGTAAATCTACTGCTGTCACTTCTCCTGTCCACACGCTGGTGCCGATTATCCACGTTTGAACTCAATCCTGCTTGACTCAGACTGATCCTCACCTGTTGGCTGCTCACAGACACTGCTAATCAACACACTGGAAACAAACGCAAGGGACTGGTCCGAGCCCTGGGCCCTAGGCACTGTCCTGCATGTTTTAGTCCAACTGCACCCCCCTCCCTCTAAGCTACGTTCAACATCACCAAAACAGCCATTCTACGCTGTGTTCTATGAAGACTTTAACCCTAAGACAAGAAAACAGAGGTTGTTTGCCTTGTTAGAGACTGCATGATATTATAAACCATTTTTGGACTCTACTAAAGAGTCCTAAAAAGAAAAAAGAACATGTAGACAGCCTTTTGTTGAAGTAGTTACTCGATGGTGAGATgcgatattttttttattttcttgatCCAACTTGCAGCAGAGTTTCACTGTATCAAGCAAGGTCGTCTTTCATTTTTAACCAAAAGGGAATTTATCCTCTCACCAGATCGCATCTACATACCTTTAGACAAACGTAGAGGTTGTGTGTAAATGTCTGTAAACTGTGTGTAAATGCCTGCTTCTCAAACACACACCACTCACCCATCTTCCATAAGCTAAGGAAAAATGATATTGATATCAAATGTATATAGATATACTACTTTGAAAGGTGACAtagctaaaaaaaaatatttatttttgttgcTTTGTTCCTCCATGATAactcatatatacatatattgtaCAGTCTACATAAAGAAGATTACCTTAAGGATTGAGAAAAAAACTACTTATTTTGGCTAATGATTTCAAAGTCGGGAGATTTTGAAAGGCTTTTGGATATATATGGTGTACATTACTCAGTACATGTATGTTTGTTCCAGCTCGTCACGTTTCTTCTTCTTCGCGTTCTCAGAGATTGAGGTTAGGCATGTATGGGATGAAAGCATATGATTTTTACAGGAAAAATGCATGGACAAAACCATCCGGGTGGTAGACCAACATAATGTTCAAGTTTGTCTTAAACGCTGCCATAATACAGCGAATAATATCAGTTACCTGGCAGATGTTGTTGCCAGTTTTAGGGTCAGCTCTTGAATATGGATTTACCATATTATGAAAAGATGAAATGTTCTTAAAAAAAGAATACGTTTTTATAAGGGAAGCATGAGGACATTTAATTTAGAAGTCGACCTTAAATGCAATATGTAAACAACAATGAGCAACCCATCATACCGACATTATGATTTGCCAAAGATTCAAACACATAACTTCTATGGTGTCTACATGTTTGGCTTTTTTCCAAGGAAATTGTGATGCTAAGCCAAATGAATTCATAAATGTTCCTTCTGTTGCCAGTAAATATGCAGACCCACATACCACTAACACCACCATTATATATTaacttctctattctctctctcatcctcttcatTGCAACTGAATGGAGTTGAGACTATTGTTAACCCGTTTAGAAATACCAAGCACTTACCAATGGAATACCACAACCATACAACAGATGCAGAGATGCAAACAATTACTTTATATAATTTCCTGTGAATATCAGTGTTGAAGGCAAAATGTTGTCTACAATTCTTCAAATCTCTTTTATTTGAGCTACTACGTCTAGCTGTAGTCACCCCGATGTCCAAACTGTGGCCCTCTGTGGCCCTCTCACAAGTAACATGATTTATTTATTCTCCTTATTTATTCTTTATTTGCtggtatgtttttattttttatttttaacatttcAAGCTACATGACCCCGCGGCTGTCAGTCAGTGTTAACCAATGGAAATGGAATGTATTTttgtgtggaggtgtgtggagGAGTTCAGTGTACAGACGGGACTTATAGAGTGTGTGAATGTACTACTAAGGATGTACAGAGGGGTCTtgtgtttttttcttcatttgCATTATACTGTCATGGCTTACCTGTTCctgaggagaaaaaaaaacattaaagcaATACAAATCCGTTACAGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739899 lncRNA upstream 1980 14941895 ~ 14942120 (+) True G1519770
TU1739895 lncRNA upstream 13062 14930827 ~ 14931038 (+) True G1519766
TU1739856 lncRNA upstream 22583 14911596 ~ 14921517 (+) False G1519751
TU1739855 lncRNA upstream 22583 14912631 ~ 14921517 (+) True G1519751
TU1739870 lncRNA upstream 24696 14918705 ~ 14919404 (+) True G1519752
TU1740008 lncRNA downstream 6676 15140010 ~ 15140233 (+) True G1519859
TU1740012 lncRNA downstream 14456 15147790 ~ 15148181 (+) True G1519863
TU1740034 lncRNA downstream 20976 15154310 ~ 15154547 (+) True G1519878
TU1740044 lncRNA downstream 38028 15171362 ~ 15171586 (+) True G1519888
TU1740045 lncRNA downstream 38622 15171956 ~ 15172188 (+) True G1519889
XM_036951026.1 mRNA upstream 42746 14898154 ~ 14901354 (+) False il8r
NM_001124279.1 mRNA upstream 42747 14898448 ~ 14901353 (+) False il8r
XM_036951920.1 mRNA upstream 63233 14877692 ~ 14880867 (+) True LOC118936566
XM_036951919.1 mRNA upstream 82256 14858722 ~ 14861844 (+) True LOC118941101
XM_021570722.2 mRNA upstream 101215 14835394 ~ 14842885 (+) True LOC110495453
XM_021570672.2 mRNA downstream 43067 15176401 ~ 15186345 (+) True LOC110495435
XM_036951943.1 mRNA downstream 74021 15207355 ~ 15251952 (+) False LOC110495440
XM_036951946.1 mRNA downstream 74023 15207357 ~ 15251952 (+) False LOC110495440
XM_036951944.1 mRNA downstream 74024 15207358 ~ 15251952 (+) False LOC110495440
XM_036951945.1 mRNA downstream 74024 15207358 ~ 15251952 (+) False LOC110495440
TU1739843 other upstream 43928 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 129214 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 386754 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 444963 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 507980 14434762 ~ 14436120 (+) True G1519096
TU1740022 other downstream 75635 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 623159 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 663018 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 785823 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 804896 15938230 ~ 15938818 (+) False G1520748

Expression Profile