RNA id: TU1740777


Basic Information

Item Value
RNA id TU1740777
length 699
RNA type TUCP
GC content 0.50
exon number 2
gene id LOC110495442
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15434412 ~ 15500787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGCGCACACGAGTTCAGTCGGGGAAGAATTTAGAGGTTCACAATGACCAGAGGTCCAGCTGTAAACTAGCTTGCTTTCAATCATTGTTAATCCATGGAATGGAGCAAAGGTTGACCTTCTCTCATACATACAGTATGAAAATAGCTGCAGGTAGCACTTTACCGCCATGTTCGTCATTGTGAAAGGtttccctctcaccccctctgtaATGTGTAACACTGGATCCTCTGTGGAAGGGAATAGTGCTAACAGGAATCTCTACTTGTCTGCTTAGAACATCTGAATCTGAAGGTTTAGGCCCTACTCTCTGGTTTCTATGAAAATTCCTATAGCAAGCCTCTTCACTATAGCAATACCACTTAGTCATTTGATACAGTCAGACGTAGACTTGGGACTCCAGTGTCCACTGTCAGGCCACTACCATGGTGAACAAAGACGCTATGGTGAGTGGGGACAGGGCTGTGGAGGAAGAGGCTGAACTGGACCTGAAGGAGACCTCCCCTGGAGAGCCTGACCCTGAGATGGCTCTTCCCCCACCTGAGGACCCCTCAGACGGCCAGACCAAGACCGCCCGGACCTGGGAGTTGTCGGTGGTGTTCCTGTGTTTCTATGGGTTTATGGTGCAGCTGAAGCCTGGGGAGCCCTTTATAACACCAAACCTGCTCAGCATGGAGAAGAACTTCACCAGGGAACAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740800 lncRNA downstream 577 15498064 ~ 15498331 (-) True G1520508
TU1740776 lncRNA downstream 5072 15434412 ~ 15493836 (-) False LOC110495442
TU1740681 lncRNA downstream 82588 15415926 ~ 15416320 (-) True G1520408
TU1740671 lncRNA downstream 90543 15407999 ~ 15408365 (-) True G1520398
TU1740631 lncRNA downstream 171730 15326090 ~ 15327178 (-) True G1520369
TU1740820 lncRNA upstream 29675 15530119 ~ 15530900 (-) True G1520527
TU1741768 lncRNA upstream 44651 15545095 ~ 15545348 (-) True G1521307
TU1741777 lncRNA upstream 56729 15557173 ~ 15560254 (-) True G1521315
TU1741799 lncRNA upstream 88641 15589085 ~ 15589828 (-) True G1521337
TU1741801 lncRNA upstream 98430 15598874 ~ 15599413 (-) True G1521339
XR_005037379.1 mRNA downstream 92361 15347965 ~ 15406547 (-) True LOC110495436
XM_036951937.1 mRNA downstream 92364 15345980 ~ 15406544 (-) False LOC110495436
NM_001124200.1 mRNA downstream 230791 15266650 ~ 15268117 (-) True inh
NM_001124649.1 mRNA downstream 295704 15186825 ~ 15203204 (-) True igfbp2
XM_021570723.2 mRNA downstream 668784 14814602 ~ 14830124 (-) True LOC110495454
XM_021570713.2 mRNA upstream 94641 15595085 ~ 15600875 (-) True LOC110495447
XM_021570684.2 mRNA upstream 101244 15601688 ~ 15603958 (-) False LOC110495443
XM_021570685.2 mRNA upstream 101244 15601688 ~ 15604709 (-) False LOC110495443
XM_021570975.2 mRNA upstream 205178 15705622 ~ 15710368 (-) True LOC110495638
XM_036951986.1 mRNA upstream 342766 15843210 ~ 15847259 (-) False LOC110495652
TU1740584 other downstream 221887 15276063 ~ 15277021 (-) True G1520339
TU1740147 other downstream 911349 14580969 ~ 14587559 (-) False LOC110495477
TU1740149 other downstream 911349 14580969 ~ 14587559 (-) True LOC110495477
TU1739599 other downstream 991590 14506400 ~ 14507318 (-) True LOC110495482
TU1739561 other downstream 1012812 14484679 ~ 14486096 (-) True G1519529
TU1741769 other upstream 47432 15547876 ~ 15548483 (-) True G1521308
TU1741790 other upstream 102393 15602837 ~ 15603905 (-) True LOC110495443
TU1741859 other upstream 185457 15685901 ~ 15759234 (-) False G1521387
TU1741988 other upstream 370532 15870976 ~ 15872466 (-) True LOC110497059
TU1742066 other upstream 494520 15994964 ~ 15995317 (-) True G1521563

Expression Profile