RNA id: XM_036951964.1


Basic Information

Item Value
RNA id XM_036951964.1
length 4273
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC110495446
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15503014 ~ 15536810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCACAACATCGTCAGTGTAGTCAGGGTATCACACTGCCACAAATTGTTCGACTAGGATGCAAGGCTGTTTCATTTCGTCATTTTATTTACAGAGGGGTCACGGGTTCTCTGTCTCGCCCATGTGATTTGGCCTTTCCAACCAATCAGATATCCCGATCCAGACTGGGCATAGCAAAGGGGAGAGGGAAAAAATCATTTTCATTCTGTGTTTTTTTAATCTTTTGCGAAACGTCGAAAGTGGTCGCCATCTGTTTTACGCTGCACGAAGgtgactggttggctggctgtgGCATCACACTCTCATTGGCCCTGGGACTCCTCTTCTACGTGACCACACCCCTTCCTTCACATCCAATCCCAACATGGAACCACCTAAGGTGCAGCAGCCAGGCGAAGGAGGCCTCAACGTCACCCTCACCATCAGGCTTCTGATGCACGGCAAGGAGGTTGGAAGCATCATTGGAAAGaaaggagagacagtgaAGAAGATGCGTGAAGAGGTAAGTGCAAGCGGTGCACGCATCAACATCTCTGAGGGAAACTGCCCAGAGCGGATAGTTACCATCACCGGACCCACAGATGCCATCTTCAAGGCCTTCGCCATGATCGCATACAAGTTTGAAGAGGATATAATCAACTCTATGAGCAACAGTCCAGCCACCAGCAAGCCTCCTGTCACCCTGCGTCTGGTTGTCCCAGCCAGCCAATGTGGCTCCCTCATAGGGAAAGGAGGCTCCAAAATCAAAGAAATGAGAGAGTCCACAGGTGCTCAGGTACAGGTCGCAGGGGACATGCTGCCCAACTCCACTGAACGAGCAGTCACCATCTCAGGAGCCCCGGAAGCCATTATCCAGTGTGTCAAGCAGATCTGTGTTGTCATGCTAGAGtcccCACCGAAAGGTGCCACTATCCCCTACCGCCCCAAGCCTGCCTCCACCCCCATCATTTTTTCAGGTGGCCAGgcGTACACCATTCAGGGACAATACGCCATCCCTCACCCTGACCTCTGCTGTCCCTCCTACCCCCCTCAGCAGTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTAACCCCCTTGGACAGACCACCCCTGCCTTCCCCGCAGGTCTGGATGCCAGTAACCAGGCCAGTACTCATGAACTCACCATTCCCAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCTAACGCCATGGAAGGGTCATCGGAGCGCCAGATCACCATCACAGGAACCCCCGCCAACATCAGCCTGGCCCAGTACCTCATCAACGCAAGGTTCAGAGACGTGGCGGCCATGTGGAATGACCCATCCTCCATGACAACATCCTAAGGACCCAGCCCGGCCGGCCTCCACTCCCTCTGCTCCGCTCCCTCCATCTCCTGACCACTGAAGACATGATGTTCCTACCTAACTCCTGATGATGATGCCCTCTAGACTAATGAATCTGGCTCTGATAACAACTCCCTTGACCCTCCAGCTTACTACCATGATCGCTCTCTAATAAGAGAGCTGTTGCTTTCAGAGAAACTGAAAAAATAAGTAATGTCTTTGTTTTCGTTGATTTTAGACCTTTAGACAAGTGTTGAAGCATGTTGAACGTTCATTAGGATCAAATTGTGTTATTCTGAatcatctctctctatcactctgtctGCTACTGTTACAAAATAGGATTTCAATATCAGTttgaaaaaaaatgtacaaaaaaaaatgtgtaaaaatttTAAAACATTGGAAAAAAATGCTACTGTTCTATTTTCTAGGTGCTGGGTGATGCTATCGGCACAGTATGGTGGGATGTAGCCCAAGGATTACTTTATGATGCTCTTTTGAAAATAGGTCTTTTTAGGTACATTTAATCGTTCTATTTTGATCTGCTTACTAATCCGATCTCTACCCATAACTTTTTGCTGCATCACATGACCTCTTTGAGCCAATGGTATCACTCCTAGAGCCCTCCTTTCTATGTTCATTTCTTGTATTTTACATTATGACTTATACTGCATGTGTTCAgtaatgtattgtatgtatttGAGTATTCCAGTTTGGTGTAAGTGTTCCTATGGTGTTGCTATGTTAGTGCTGATGGGAGGAGCTATTGggggatgggctcattgtaatggctggaatggaattaatggaacataGCCAAAGGTGTGGTTTCCATTTCTTTGatgtgtttgactccgttccatgtattctattccagccattacaatgagcccgtcctcctataactcctcccaccagcctccactgctccaAACCTTTTCCGCAATTATTTTCATGAGTTTTTTTGCCATTCACGTCTAGTCCTACTACCACCCCAAATGAATAActctccctcacatcctccaggAACCCTATTTATAGTATTTAAGAAGCATGAAAGGAAATTACTCAAGAAAAGAGTCATCAGTGGCTAAAAACTGTATCCTAACTGACTGAAAACTAAAATGATTGTTTACTCGATTTCTTAACCAAGACTACTGTGGGTGACCACATAGTCAGCTATGCTACGCTCATGCAATAGACAATTCAACTCTTCGTTATACTGTGGACTGCCTCTAGTGGGTGAGGAATTAGTTGGACTTAAGACTATTGCTGTGTCCAAATTCTCTTAGTTGGCTTCCTTTCGTCGTCTCCTTCACTCCCATATCCACGACAGATAAAAGAGGCTTCAATGTACTACTCTTGAAGGAAAGGAGACCAGGAGAGGAAGCTGTTTGATATTATTGGGACGTGGCCATAGGTGTTTGGATGGAGCCAAATGTTTATGGGCCATGGAATGTTCCGGGGTTCATGGGGGAACCCGTGGGGCCTGGGCGGACGTGTTTACCCCCACGCCGCCACATTCGCGATTGTTCATCCATCATGTTATTTCATTATAATATTGTTTATTTAATGCTTTAGGTTTTGAATGTCATCATGCTTTTACTATGATGTCAACCGATTAGATGACAAAGTCATGTTGCTCGTTTTAagtgatttaaaaaacaaaaattgCAATTCTATTTATTGTTTCTTGGTGCATCATAATGACTGTTTTGGTTGATCATGATATTTAAGCTAGGTTTttttgtgtgtactgtattggATTTCAGGGTAGGTTTGGGCTATATTTGCTTGGATTAAACATGTAAAGTTCCCTTCATAACAATTCTCAAGCTTATTCAAAGTATAGGCGGTTGTGACATGGCATGTTTGCAAGCCTGGGCTGAGGTCATATTCAGCATTGATGCATATGAACAGCCGTTGAATGTTATCCTCGCAACACAGGTCATTCATTCACTGTCCAACTGGTTTCAAGTACAGTAAAAACCATCCTGGTCTGGATTTTCATTCTGTAAGACTGGTTTGTTTCATGCAACTCCCTGTTTTGGTTTCAATATGCTGAGCCTGACTTTGGGTCTAATTTCAACCGCTTTCATCATATAAAGGTGATACGTCAATGGACCAAAAGCTGTACTGATGTACTGAATGATGCATAGTTGATTATTATTCTGCAATAATTCTTACATTTTGATGTTAAACTGAAGTGGTAGTGCTAGCCTTGACATTATGGGTTTGTGTTATTCGTTTAATTTAAAACTTTGTCATAGCTCGTAACTCAATGGAATGTTTGTCATTTAAGCAAGTTAAAATGTCTGTTTTATTTGGCTCGCTTTTTAGAACTGTTCAGCTTCTCATCATCGATTGCATTCAGACTAGGCAGGAATATTGAATTGTTGAAATAGTGATGCCAATGTGTTTTCAATAACTTCAATATCCACATGTTGTTACAGTGTATTGAAACTGTATTTACACTGGCGTATATGACAGAGTATACACACCTACTGAAACAGACTAAAATGCAACTGATGCAATAACAAGGGAATGATGTgcaattattatttgtattttttcttgTGCATATAATACAAGGAAAGTTTGTCATGTATTTACAACTCGTTGTTGCTCCTTGACCTCCTTCCTTTCTGGACGGCGGCAGCAACAAAAATGGAAAAAATACATGAGATATTCTTTTTCTTCGTTTTTGCTCCTGTATATTTTGCTTCTTTAGGAAAATGTAACGGAGCTTGGTATATATTTTCAGTTGGATTATTTGCAATGAGCAAATCTATCTTAGGTTGAAGTAATTTCATTATTTAGGTTACTTTTGAAAATGTTTGTAAGTAAGAAAATGAATAAAGTTTTTCTTCTTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740744 lncRNA upstream 18004 15501939 ~ 15502231 (+) True G1520456
TU1740739 lncRNA upstream 21902 15498107 ~ 15498333 (+) True G1520451
TU1740738 lncRNA upstream 23036 15496424 ~ 15497199 (+) True G1520450
TU1740701 lncRNA upstream 25387 15493946 ~ 15494848 (+) True G1520413
TU1740709 lncRNA upstream 91732 15428174 ~ 15428503 (+) True G1520421
TU1740762 lncRNA downstream 106 15536916 ~ 15537903 (+) True G1520473
TU1740765 lncRNA downstream 2855 15539665 ~ 15541328 (+) True G1520474
TU1740822 lncRNA downstream 4651 15541461 ~ 15541662 (+) True G1520529
TU1740826 lncRNA downstream 7136 15543946 ~ 15544242 (+) True G1520533
TU1740845 lncRNA downstream 8006 15544816 ~ 15545020 (+) True G1520546
XM_036951940.1 mRNA upstream 30036 15419061 ~ 15490199 (+) False LOC110495439
XM_036951985.1 mRNA downstream 18049 15554859 ~ 15563239 (+) False LOC110495448
XM_021570715.2 mRNA downstream 19142 15555952 ~ 15563239 (+) False LOC110495448
XM_021570716.2 mRNA downstream 19571 15556381 ~ 15563239 (+) False LOC110495448
XM_021570682.2 mRNA downstream 49098 15585908 ~ 15596051 (+) True LOC110495441
XM_021570719.2 mRNA downstream 70673 15607483 ~ 15615215 (+) False LOC110495451
TU1740022 other upstream 303991 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 620063 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 705349 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 962889 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 1021098 14498786 ~ 14499137 (+) True G1519538
TU1740959 other downstream 219683 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 259542 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 382347 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 401420 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 401591 15938401 ~ 15938818 (+) True G1520748