RNA id: XM_036951988.1


Basic Information

Item Value
RNA id XM_036951988.1
length 2485
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110497059
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15869734 ~ 15873958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCTAAATTTGTTTTGTGTTGAAGTATATTCAAGGAAAAACAACACAGAGGGGTATCGGACGCACACAATTAATTTAAACGCCTTTCTTCTTGTTGTTTTCGGACTAAACTTGTTTTACATTATCCTTACAAAATGTCACAACAAGCTGGTTACTCACCTAGTTTCAAAAGACCAGCTGAAATCCTGCGAATGCGGAGGAAGAGAGCAAGGAGCGAGGGTGTCAGTTCTGGCGGCCGAGGCGCGATTTCCAACCCGTGTGAGGGTGCCTCTATATCCGCCGTTCGACCATTCTCCCCAGGACCCCTGTTCGGCCAGGGTCGCTCTGGAGGGGGAGTGAAGCGGAGAAACCCATTTGCTAGCATCGAGAACACCTTCAGCAGCCCAGCGAAGAAGAAAGTCTTTATTTACACTGATGACGACGCCGACTCGTCGGATTCTGTGAAACCGGGCGGCTCTgcaggagtggagggagagaagtcaCCAACAAGAACACTGCCATTTAGTGAACGACTTCTCCAGGCAGAAGAACTAAGCAAAGACGTGCCTAGCAAGAAACCAACTTCTCTGTCTGAAGACGACTCACTGTTTGAAGATGAGGATTTGTTCCAGGAGGAGAGAACACCCATACTGAAGAGTCCCCAGGCTGGTGCAGTAACCTCCATAGCACCCCCTGCGTGTGTGGAGTACCCTGCAGACTGGAGCCTGAAGACGCGTCTCCTTTTCACCTCCCTGCTCCCCTTCTCCTGGGCTGTACAGCCCAGAGCTACAGAGGAGGCCCAGGGTCTTACCCAGCACTGTAGAGGACAGTACACCACTATACCACAGAGTATACAGGACCCTCGGACATCTGCTGAGCTACGATGTGGGTTCCAGCAGTGTCTGCAGTTCTGGCAGCACCCGTCCCTGTCCTGGCTCTCTCTGTTCCCCCGGATAGGAGCAGAGAGAAGCTTCACTGGCAAGAACGTCCCCTGGGCCCAGGACATGGCACTTCAACAGAGCCTCATGAGTGAATGGTCAGTGAGCCTGTCTTCCCTGTACAGTCTATTGAAGGCCAGACTATGTCCATATTTCTATGTGTGTTCCTACCAGTTCACTGCTCTTTTCAGAGCCTCAGGACTGGCGGGGAACAGCAACATCACTGCACTACTCACCCCAACCACCAGGGGGCTCAGGGAGGCCATGAAGGCTGATGGTATTGAGTTCACACTCCCCCtgctggaagagaggaggaagagcaaGGAGCAGGGATCAACCGCACACAAccaggagacagatggagaggaggaggagacacagtCTGAAGCCAGTGACAAGGAAgacgatgatgatgacgatggtgGGTTTTCCTGGCTGACGGAGATGGGAGTGCAGGATAAGATTAAGAAACCAGACAACATCTCCATCAAACTGCACAAAGAGCGCAACTCGGTGTGTTTAGACCACAAACCAGAGTCTGTAGTCTGTGTGTCAGGAACGCACACCTTCACTCTCATCAACTTCCTCATCAACTGTAAGAGCCTGGTGGCAGGGGCTGGATCACAGGCAGGCCTGCCCCCCACCCTACTGGCCCCTACAGCCTTCAGAGGAGCTACGCTACACTCACTCAAGGCGCGTAGTGTGAACGTGAAGACCCAGGTGCGTGCTGGGTACCAGGATGTGTGCAGTCTAGAGGTGACGGGACCCATAATGCCTCATTCTCTCCACGCCCTGACCCGCCTGCTTCGGCCTGCTCAGAGAGGAGGCTTCAGCactgcactctacacacacgaaCCCACTGCtgtcctcaacacacacaccaccaccagggaacaggctgAGCAAGCTGTAGAGCTGGATGGATGTGGTCTTCATTCCAGCACCATCCAGCAGCTCCAGGAGCCCTCTACCTTGGGGAAGTCTCCCCTCAGACAGCTCCATTTGAACAACTACTCCTACACATGGAAGTCCTGAGAGGAACTCACCCTGCCTCTATCAGAATGCCCAGAGAGCACTGCTAGGctacgtcccaaattgcacccttttctctttatagtgaaatgcttttgaccggagcccaataaagtagagcactatattggaaatagggtgccatttgggacacagcctagaTGCCTTTAGTGGACCGTACCATTCCTACACTGCTGTATACTTACTGTCAATATCTGTCTGAATAGCCTGTCAAAAACTCCTGGTATTCTGGCAATTGAAGTTTTACTAACTCCCTGTCCCCTGGACTTACAACCCAATGACATATGGGAAATGAAGTTTTTGTACATGTACAATTCCTGGATTTGCCATAATGAGTTGGATTTGGCTAAAGACTTGCTGATGATTTTAGACCCTGCCCTAAGATGTTTTTGTTTTGAACCATTTTTTTTATTCCTGTTTTAAGAGCTTCTATTTCAACATAATTGTTTTATATTAATGACGTTATATCTCTGTACTGGTGACATTTTATTGGATTAAATTAATTTGTCACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741985 lncRNA downstream 2711 15866695 ~ 15867023 (-) True G1521498
TU1741975 lncRNA downstream 3069 15828151 ~ 15866665 (-) True G1521488
TU1741937 lncRNA downstream 19883 15848680 ~ 15849851 (-) True G1521452
TU1741971 lncRNA downstream 43365 15825848 ~ 15826369 (-) True G1521485
TU1741861 lncRNA downstream 53777 15756222 ~ 15815957 (-) True G1521387
TU1741991 lncRNA upstream 2195 15876153 ~ 15876784 (-) True G1521503
TU1742003 lncRNA upstream 38161 15912119 ~ 15912445 (-) True G1521514
TU1742004 lncRNA upstream 38750 15912708 ~ 15913081 (-) True G1521515
TU1742006 lncRNA upstream 43533 15917491 ~ 15919191 (-) True G1521517
TU1742012 lncRNA upstream 67934 15941892 ~ 15942105 (-) True G1521523
XM_036951987.1 mRNA downstream 21544 15843210 ~ 15848190 (-) True LOC110495652
XM_036951986.1 mRNA downstream 22475 15843210 ~ 15847259 (-) False LOC110495652
XM_021570975.2 mRNA downstream 159366 15705622 ~ 15710368 (-) True LOC110495638
XM_021570685.2 mRNA downstream 265025 15601688 ~ 15604709 (-) False LOC110495443
XM_021570684.2 mRNA downstream 265776 15601688 ~ 15603958 (-) False LOC110495443
XM_036951992.1 mRNA upstream 3545 15877503 ~ 15900199 (-) False LOC110495653
XM_036951993.1 mRNA upstream 3545 15877503 ~ 15900210 (-) False LOC110495653
XM_036951991.1 mRNA upstream 3545 15877503 ~ 15928298 (-) False LOC110495653
XM_036951989.1 mRNA upstream 3545 15877503 ~ 15928773 (-) False LOC110495653
XM_036951990.1 mRNA upstream 3545 15877503 ~ 15928773 (-) True LOC110495653
TU1741859 other downstream 110500 15685901 ~ 15759234 (-) False G1521387
TU1741790 other downstream 265829 15602837 ~ 15603905 (-) True LOC110495443
TU1741769 other downstream 321251 15547876 ~ 15548483 (-) True G1521308
TU1740777 other downstream 369290 15498908 ~ 15500444 (-) True LOC110495442
TU1740584 other downstream 592713 15276063 ~ 15277021 (-) True G1520339
TU1742066 other upstream 121006 15994964 ~ 15995317 (-) True G1521563
TU1742041 other upstream 148509 16022467 ~ 16024354 (-) False LOC110495656
TU1742042 other upstream 148509 16022467 ~ 16024354 (-) False LOC110495656
TU1742043 other upstream 148648 16022606 ~ 16024382 (-) False LOC110495656
TU1742044 other upstream 148648 16022606 ~ 16024354 (-) True LOC110495656

Expression Profile