RNA id: TU1741988


Basic Information

Item Value
RNA id TU1741988
length 827
RNA type TUCP
GC content 0.57
exon number 4
gene id LOC110497059
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15869734 ~ 15873958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGACCCTCGGACATCTGCTGAGCTACGATGTGGGTTCCAGCAGTGTCTGCAGTTCTGGCAGCACCCGTCCCTGTCCTGGCTCTCTCTGTTCCCCCGGATAGGAGCAGAGAGAAGCTTCACTGGCAAGAACGTCCCCTGGGCCCAGGACATGGCACTTCAACAGAGCCTCATGAGTGAATGAGCCTCAGGACTGGCGGGGAACAGCAACATCACTGCACTACTCACCCCAACCACCAGGGGGCTCAGGGAGGCCATGAAGGCTGATGGTATTGAGTTCACACTCCCCCtgctggaagagaggaggaagagcaaGGAGCAGGGATCAACCGCACACAAccaggagacagatggagaggaggaggagacacagtCTGAAGCCAGTGACAAGGAAgacgatgatgatgacgatggtgGGTTTTCCTGGCTGACGGAGATGGGAGTGCAGGATAAGATTAAGAAACCAGACAACATCTCCATCAAACTGCACAAAGAGCGCAACTCGGTGTGTTTAGACCACAAACCAGAGTCTGTAGTCTGTGTGTCAGGAACGCACACCTTCACTCTCATCAACTTCCTCATCAACTGTAAGAGCCTGGTGGCAGGGGCTGGATCACAGGCAGGCCTGCCCCCCACCCTACTGGCCCCTACAGCCTTCAGAGGAGCTACGCTACACTCACTCAAGGCGCGTAGTGTGAACGTGAAGACCCAGGTGCGTGCTGGGTACCAGGATGTGTGCAGTCTAGAGGTGACGGGACCCATAATGCCTCATTCTCTCCACGCCCTGACCCGCCTGCTTCGGCCTGCTCAGAGAGGAGGCTTCAGCac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741985 lncRNA downstream 3953 15866695 ~ 15867023 (-) True G1521498
TU1741975 lncRNA downstream 4311 15828151 ~ 15866665 (-) True G1521488
TU1741937 lncRNA downstream 21125 15848680 ~ 15849851 (-) True G1521452
TU1741971 lncRNA downstream 44607 15825848 ~ 15826369 (-) True G1521485
TU1741861 lncRNA downstream 55019 15756222 ~ 15815957 (-) True G1521387
TU1741991 lncRNA upstream 3687 15876153 ~ 15876784 (-) True G1521503
TU1742003 lncRNA upstream 39653 15912119 ~ 15912445 (-) True G1521514
TU1742004 lncRNA upstream 40242 15912708 ~ 15913081 (-) True G1521515
TU1742006 lncRNA upstream 45025 15917491 ~ 15919191 (-) True G1521517
TU1742012 lncRNA upstream 69426 15941892 ~ 15942105 (-) True G1521523
XM_036951987.1 mRNA downstream 22786 15843210 ~ 15848190 (-) True LOC110495652
XM_036951986.1 mRNA downstream 23717 15843210 ~ 15847259 (-) False LOC110495652
XM_021570975.2 mRNA downstream 160608 15705622 ~ 15710368 (-) True LOC110495638
XM_021570685.2 mRNA downstream 266267 15601688 ~ 15604709 (-) False LOC110495443
XM_021570684.2 mRNA downstream 267018 15601688 ~ 15603958 (-) False LOC110495443
XM_036951992.1 mRNA upstream 5037 15877503 ~ 15900199 (-) False LOC110495653
XM_036951993.1 mRNA upstream 5037 15877503 ~ 15900210 (-) False LOC110495653
XM_036951991.1 mRNA upstream 5037 15877503 ~ 15928298 (-) False LOC110495653
XM_036951989.1 mRNA upstream 5037 15877503 ~ 15928773 (-) False LOC110495653
XM_036951990.1 mRNA upstream 5037 15877503 ~ 15928773 (-) True LOC110495653
TU1741859 other downstream 111742 15685901 ~ 15759234 (-) False G1521387
TU1741790 other downstream 267071 15602837 ~ 15603905 (-) True LOC110495443
TU1741769 other downstream 322493 15547876 ~ 15548483 (-) True G1521308
TU1740777 other downstream 370532 15498908 ~ 15500444 (-) True LOC110495442
TU1740584 other downstream 593955 15276063 ~ 15277021 (-) True G1520339
TU1742066 other upstream 122498 15994964 ~ 15995317 (-) True G1521563
TU1742041 other upstream 150001 16022467 ~ 16024354 (-) False LOC110495656
TU1742042 other upstream 150001 16022467 ~ 16024354 (-) False LOC110495656
TU1742043 other upstream 150140 16022606 ~ 16024382 (-) False LOC110495656
TU1742044 other upstream 150140 16022606 ~ 16024354 (-) True LOC110495656

Expression Profile