RNA id: XM_036951993.1


Basic Information

Item Value
RNA id XM_036951993.1
length 3177
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110495653
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15877503 ~ 15928773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCGTCCCCAAAATGCGTCGCGGTGGCCTCCATATAATCTATTCGCAGATGTGATGCTGCCTGGGTTATATGGTTAGAGCGATGACTATTGCTGATATCATATTCCCCGAATAAATCAGCGCATGACCAATACGTCCACTGGAACAGTACACGCGCCCTGGAATTCAGCAGAATGGCTGTCTTTGTATAAATGTCCCCCTCATCGACAGATGAGTCATTTTAGCTTCTCTCTTTACTTTTCCGGTTATTGAACGTCTATATAGGCACATAGGCTATGTCTTATTGGCTAACGTATTGCATGGATATTTACTCATCTTATTTTGTTATGGTGTATGCAGACTATGTTTCGACACCGTCACGAGAAATCATCCGGGAAATATCAGGCATTAGGTAGTCTAAAGTGTATTTCCAACTAAATATGTGTGTTTGGTGTCCAAACGCATAGGCCTAATTGTGATTTGGGCAGTTTTTTTGTGAACAATCATTTTAATCCACCTTTCAATATACtttcttgtgttttttgtttttgtattggTATCCAACATCCAATTGCACGCTGTTGACTTTTAGGTTAAAACCACAATACTAGAGCGCGACCGCTGTGTCCGTCTCTCGTCCGCCATCGTGCACCGCAGCCCCAAAGTGGAATTCCATTGACTGGCCCGAGCCTTCCTAAAAACCCACAGTTCTCCATCCCTGGACGGacgcagctctgattggttaaacCCTCCCGGACTCTCCGTTGTTGCTCGATTCCATTGGCTGAGATCTGTCTCTATGCAAATCCAACCCTGGAGGGACGCATTCCAGCACTGCAGACTGACTGCCAGTAAAACCCTGCCTCCCACTGTCGGGACGTTCATTCATACGCAGCAACTCAACTCTATACACAACCGGAGCATTCAACAAGGGTTTGTCGAAATATAAGGCTGTTTGCAGTGACACATTCTAGCCTATTCCTCGTTTACATTCCAGACACTATTTATAAAAGCGAAATTGAAGTATAAAAGTTTTTTCGGTCTCCCATGTTGGCACGCATAGAGACGAGAATATTCCTATTGCGAATTGGGGAGCCATAGAGCATCCATCAAAGTTGACCTTTTGTGGCGAGTAACTCACAAGTTATTGAAGAACAACAGAAGAGGAAAAGACGAGAAAAAAATAACCCAACTGGACTTTCTTATTCGCTGTTCATTTGAATGCGCCCTGAGACCTCCTTGGATGACGGTCGGGTTTTATTTAGTATCTGGTCGGTGGATGCCTCGTCAGTTTATGTGTCCATAACACGGATCATGGAATGAGGACTTCACACACCGAAATTTGGCGGGATGTGCGTAATTTGTTAACCGAAGGTCTTTGACTCCACTACAACGCAGAGACCCAGTTTTATTCGTGCCCACGCAGGTATCAGACTGTCGCCTGATTTCCACTGTTGATCCACGTGCCTTGGGACAGTTCATCTAACGACAACGGGTTTAATTTTAGAGGCAAATATCAGAAGAAACATAGAGCTATATATTCCACAGAGAGTCCGTTTAACTGGATCCTACTGCGGTGTACAAATGGTCTTCCTTTGGGACGCCAAATACGACCCAGCACCTGGTCGGCGCTTCACCCCCCCTTCCACCACCCTGTTGTCAGGTAAGATGAGTGAGGGTCTGCCCCTGGGTGCCCAGGAGAGCAGTAGCGCCGCCCTGGTGGGAAAGCTGCGTATTGCAGACCGAGGCATGGTGGAGGTGCTGTCAGAACACCCTGGAGAACTGGTGAGGACAGACAGCCCCAACTTCATCTGTTCTGTcctacccacacactggaggtGCAACAAGACGCTGCCCATCGCATTCAAGGTGGTTGCCCTTGGTGATATCCCTGACGGTACCTTGGTCACGGTGATGGCGGGGAACGATGAGAACTATTCAGCAGAGCTCCGCAACGCCACGGCCGCCCTCAAGAACCAGGTGGCTCGCTTCAACGACCTGCGCTTCGTAGGCCGCAGCggaagagGGAAGAGTTTTACTCTGACCATCACAGTGTTCACCAACCCTCCCCAGGTGGCCACCTACCAGAGAGCTATCAAGATCACTGTGGACGGGCCCAGAGAACCACGCCACTCTAGGCAAATGCAGACATCTCCGTCGTGGTCCTATGAGCAGTCCTACCCCTACCTGGGTCAGATAACCACGCCCACCGTCCACTCAACCACGCCCATCTCACCCAGCCGCTCCTCCCTCAGTGACCTGTCCAGCCGCCTCTCAgGCCCTGACCTCACAGCCTTCAGCGACCCCCGTATGTCCCTGGATCGCCCGTTCTCCTCCCTGACCTCACTCCCTGACAGCCGCTACCCTGACCCGCGCATGCACTACCCTACTGGGGCCTTCACATACACCCCTACCCCTGTATCCAACGGCGCCATCGGACTGACCATGGCAACCACCCCTGCTGGGCGTTACCACACCTACCTCCCCCCGCCCTACCCTACAAACGCCCCCCAGGGCCAAAGTGGACCGTTCCAGGCCGGTTCCTCTCCCTATCACCTGTATTATAGCACGGCAGCTGGGTCCTACCAATTCTCCATGATGGCGGGGGGAGGCGGGGAGCGGTCTCCTCCGAGGATATTCCCTCCCTGCACCAACGCATCCACAGGCTCCTCCCTCCTGCACCCGTCTCTGCCAAATCAGAGCGAAGGGGTGGGGGTGGAAGCGGAGGGAAGTCACAGTAGCTCCCCTACCAATATGGTACCCGAGGCCGTATGGCGGCCATATTGAGCACGGCAGCGGGGTTGACAAATGATTGACGGACTTGCTGGCTAATTGGAGTGGAGAAGGGGCTTTCACGGAGCGTTCCTATTGGATCATTAGAATGATCAAGGAACAAATTGAGGAAGGAACagaaacagggtgccattttacACCGAGGAGCATGCAGCAGCACTGAACTGAAAATAATTCAGCTTTGTTTTATAAAAGGATTGTTTGCCATGGTTATGATTGTTGTTGGTATTATGAATTACTCTTGGCCAAAAATACAATGGGTGATTTTTATGTGCCACAGGCACTCCCCTCCTATCCCACCTCCCCTTGTCCCTCCGCCCCGTCTCCTCCCTTATCCCACCTCCCCTtgtacctcctccccctctcctcccttatcccACCTCCCCttgtccctccgccccctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741991 lncRNA downstream 719 15876153 ~ 15876784 (-) True G1521503
TU1741985 lncRNA downstream 10480 15866695 ~ 15867023 (-) True G1521498
TU1741975 lncRNA downstream 10838 15828151 ~ 15866665 (-) True G1521488
TU1741937 lncRNA downstream 27652 15848680 ~ 15849851 (-) True G1521452
TU1741971 lncRNA downstream 51134 15825848 ~ 15826369 (-) True G1521485
TU1742003 lncRNA upstream 11909 15912119 ~ 15912445 (-) True G1521514
TU1742004 lncRNA upstream 12498 15912708 ~ 15913081 (-) True G1521515
TU1742006 lncRNA upstream 17281 15917491 ~ 15919191 (-) True G1521517
TU1742012 lncRNA upstream 41682 15941892 ~ 15942105 (-) True G1521523
TU1742014 lncRNA upstream 45664 15945874 ~ 15946085 (-) True G1521525
XM_036951988.1 mRNA downstream 3545 15869734 ~ 15873958 (-) False LOC110497059
XM_036951987.1 mRNA downstream 29313 15843210 ~ 15848190 (-) True LOC110495652
XM_036951986.1 mRNA downstream 30244 15843210 ~ 15847259 (-) False LOC110495652
XM_021570975.2 mRNA downstream 167135 15705622 ~ 15710368 (-) True LOC110495638
XM_021570685.2 mRNA downstream 272794 15601688 ~ 15604709 (-) False LOC110495443
XM_036951995.1 mRNA upstream 96756 15996966 ~ 16001636 (-) False LOC110497061
XM_036951996.1 mRNA upstream 96756 15996966 ~ 16015860 (-) False LOC110497061
XM_036951994.1 mRNA upstream 96758 15996968 ~ 16008823 (-) True LOC110497061
XM_021570997.2 mRNA upstream 122356 16022566 ~ 16024378 (-) False LOC110495656
XM_036951999.1 mRNA upstream 122356 16022566 ~ 16024378 (-) False LOC110495656
TU1741988 other downstream 5037 15870976 ~ 15872466 (-) True LOC110497059
TU1741859 other downstream 118269 15685901 ~ 15759234 (-) False G1521387
TU1741790 other downstream 273598 15602837 ~ 15603905 (-) True LOC110495443
TU1741769 other downstream 329020 15547876 ~ 15548483 (-) True G1521308
TU1740777 other downstream 377059 15498908 ~ 15500444 (-) True LOC110495442
TU1742066 other upstream 94754 15994964 ~ 15995317 (-) True G1521563
TU1742041 other upstream 122257 16022467 ~ 16024354 (-) False LOC110495656
TU1742042 other upstream 122257 16022467 ~ 16024354 (-) False LOC110495656
TU1742043 other upstream 122396 16022606 ~ 16024382 (-) False LOC110495656
TU1742044 other upstream 122396 16022606 ~ 16024354 (-) True LOC110495656

Expression Profile