RNA id: TU1742043


Basic Information

Item Value
RNA id TU1742043
length 562
RNA type TUCP
GC content 0.52
exon number 3
gene id LOC110495656
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16022467 ~ 16024382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGGAGCAGTGCCACATATATCTGTGCAAGGGGAAACTTCACCCAAAGCCACTTTCTTAACACAGTTCCGTCCAACGTCACATTACAGCAAACATGGACCACATGATCAACTGGAAGgcGTTGGACAATGTCCCTCTGCTCTTCTACATCTTGGCATTGAAGACCCTGGTCTTGTGTCTGGGCTTCGCTGGAGTGAAGATCTATCAGGCTAAGAAGGAAGAGGCCAAGCTGAAGATACAGAGGGCAGAGCAGAGGAGGATAGCGGAGCAGGTGCAGGAGCTCCTGGATAACGAGCTCCTGGACAACAAGAAGGATGACTGACCCGGAGGAACAAGGGAGAGTGTGAGGAGATGAAAGGAACTACAGTATGTCACCTGACCAGACTGGGGACCTACATGCTCCAAGGATGGGGCGGAGCTCTGATTGGCTGGTCTGGGGAGGAAGTGTTGAGAATGTCTAGTTCCTGTTGGACAGTACTCACCCAGAACAGGCCTGGGGTCCTGGGCATTGCTGCGGGTgtcattctttttttttacacaaactTTTAACTTCAGAGCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742069 lncRNA downstream 9020 16013237 ~ 16013586 (-) True G1521566
TU1742068 lncRNA downstream 9586 16012691 ~ 16013020 (-) True G1521565
TU1742067 lncRNA downstream 26672 15995718 ~ 15995934 (-) True G1521564
TU1742065 lncRNA downstream 28531 15993634 ~ 15994075 (-) True G1521562
TU1742031 lncRNA downstream 52331 15970045 ~ 15970275 (-) True G1521540
TU1742075 lncRNA upstream 8587 16032969 ~ 16033299 (-) True G1521572
TU1742079 lncRNA upstream 12691 16037073 ~ 16037440 (-) True G1521575
TU1742086 lncRNA upstream 22561 16046943 ~ 16052241 (-) True G1521582
TU1742087 lncRNA upstream 29637 16054019 ~ 16054411 (-) True G1521583
TU1742088 lncRNA upstream 30363 16054745 ~ 16055020 (-) True G1521584
XM_036951996.1 mRNA downstream 6746 15996966 ~ 16015860 (-) False LOC110497061
XM_036951994.1 mRNA downstream 13783 15996968 ~ 16008823 (-) True LOC110497061
XM_036951995.1 mRNA downstream 20970 15996966 ~ 16001636 (-) False LOC110497061
XM_036951989.1 mRNA downstream 93833 15877503 ~ 15928773 (-) False LOC110495653
XM_036951990.1 mRNA downstream 93833 15877503 ~ 15928773 (-) True LOC110495653
XM_021571012.2 mRNA upstream 93719 16118101 ~ 16126127 (-) True LOC110495663
XM_036952005.1 mRNA upstream 110694 16135076 ~ 16164464 (-) False LOC110495662
XM_021571008.2 mRNA upstream 121662 16146044 ~ 16164464 (-) False LOC110495662
XM_036952004.1 mRNA upstream 121662 16146044 ~ 16164464 (-) True LOC110495662
XR_005037387.1 mRNA upstream 144863 16169245 ~ 16171657 (-) False LOC110495664
TU1742066 other downstream 27289 15994964 ~ 15995317 (-) True G1521563
TU1741988 other downstream 150140 15870976 ~ 15872466 (-) True LOC110497059
TU1741859 other downstream 263372 15685901 ~ 15759234 (-) False G1521387
TU1741790 other downstream 418701 15602837 ~ 15603905 (-) True LOC110495443
TU1741769 other downstream 474123 15547876 ~ 15548483 (-) True G1521308
TU1742040 other upstream 30746 16055128 ~ 16084966 (-) True G1521546
TU1742232 other upstream 393868 16418250 ~ 16418918 (-) True G1521712
TU1742516 other upstream 913270 16937652 ~ 16942594 (-) True LOC110495686
TU1742514 other upstream 985000 17009382 ~ 17011378 (-) True LOC118941063
TU1743542 other upstream 1417277 17441659 ~ 17450178 (-) True G1522794

Expression Profile