RNA id: XM_036952004.1


Basic Information

Item Value
RNA id XM_036952004.1
length 1336
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110495662
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16135076 ~ 16164464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAAAATTCACAGAACAAGAAAACGTTACTTTATTTTCAACTAAGCGGTCACGACGCATGCAGAGGGAAGAACTAAACCACATTTCACTTTCACAGCCTTGGGAAATTAAGATCAGAAGTAGGCTAGCTAACTAGCGCATATGCCTAAACTAACGCTCATCAGATTGTGTTTCTGGCTTTGTCTGGTGCGAACGGTGGTCTCCCGAGATGATCTTTATCATGAAGTGGGAGGGAAGCTCGTGTTGAAACCAGACAAGTCCACAGTGACTGACCCCATCACAAGCATCCTATGGAAGCATGGGAAGAACAAGGTGGCAGAGTGGGACAAGGATTTTGGTGGTCTGGATATCTATGCTGCCTTCAAAGAGCGTACAACCCTGGACCAGACTTCTGGAGAGCTGAGAATCAGTGGATTGAAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGCAAACTGCTTAACAAGACATATACATTATCTGTTATCAAGGCAGTCCCCAAACCCACAATCACTTCTTCCTGTAACCCAGACAAAACctcctgcactctgacctgtgaGGTTGACACCACTGATGCTGAACCAGTCACCTACAgctggaaagagggagagggggcgtGGGAGGACTTAGACAAACAGCTTAATATCAATAAGAGTGACACTGGCAAATCAACCAAGTACATCTGCAAAATGAAAAACCCTGTTAGTGAAGAAGTCAGTGATCCAATTGGACAGGTGTTTGATCCAGAGGCAGTCCCTAAACCCACAATCACTTATACCTGCAACACAGACAAAATCTGCATTCTGACCTGTGAGGGCGACACCACTGATGCTGAACCCGTCACCTACAGCTGGAAAGTGGGGGAGGGGGCGTGGGAGGTCATAGGAAAACAGCTGATTGTCTCTAAGAGCGACACTGGCAAATCAACCAACAGTTACAAGTACATCTGCAAGCTGAAGAACTCTGTTAGTGGGGAAGTCAGTGAGCCAGTTGGAGAGGTGTTTGGTCCAGTTTGGTTGGTGTGGAAGAAGAAAAAGGAATATCCCCAAGACACCTGGATTGACTTTTTGAGAAAGtattgtggtggaatgtgtgGGGTTCCGTTAACGCCCAACACCAAAACGGGGGAAGATGGCGCAGACAAAGCTGGAAGGGGGCAGGGGAATGAAGATGCCACTCCATTGAAGTAGAAAGACCACCAGTAAAGAATCCAGTATTTTAGGATGCTGGCGGTCGGTCTTGCTTGTGGGGTAACTGAGGACCAGAAACATGGGGTTTGAAGGCTCTCAGTACATGACTCCTTATGTTACATTGAGACAAACGACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742052 lncRNA downstream 55742 16089600 ~ 16090302 (-) True G1521550
TU1742050 lncRNA downstream 56085 16088233 ~ 16089959 (-) False G1521550
TU1742088 lncRNA downstream 91024 16054745 ~ 16055020 (-) True G1521584
TU1742087 lncRNA downstream 91633 16054019 ~ 16054411 (-) True G1521583
TU1742086 lncRNA downstream 93803 16046943 ~ 16052241 (-) True G1521582
TU1742058 lncRNA upstream 68937 16233401 ~ 16233899 (-) True LOC118941103
TU1742200 lncRNA upstream 170431 16334895 ~ 16335197 (-) True G1521683
TU1742211 lncRNA upstream 180588 16345052 ~ 16345240 (-) True G1521692
TU1742210 lncRNA upstream 181634 16346098 ~ 16346458 (-) True G1521691
TU1742214 lncRNA upstream 189750 16354214 ~ 16354733 (-) True G1521695
XM_021571012.2 mRNA downstream 19917 16118101 ~ 16126127 (-) True LOC110495663
XM_021570997.2 mRNA downstream 121666 16022566 ~ 16024378 (-) False LOC110495656
XM_036951999.1 mRNA downstream 121666 16022566 ~ 16024378 (-) False LOC110495656
XM_036951996.1 mRNA downstream 130184 15996966 ~ 16015860 (-) False LOC110497061
XR_005037387.1 mRNA upstream 4781 16169245 ~ 16171657 (-) False LOC110495664
XR_005037388.1 mRNA upstream 4781 16169245 ~ 16171657 (-) True LOC110495664
XR_005037385.1 mRNA upstream 16746 16181210 ~ 16210358 (-) False LOC110495661
XM_036952006.1 mRNA upstream 24409 16188873 ~ 16210356 (-) False LOC110495661
XM_036952007.1 mRNA upstream 24409 16188873 ~ 16210360 (-) True LOC110495661
TU1742040 other downstream 61078 16055128 ~ 16084966 (-) True G1521546
TU1742043 other downstream 121662 16022606 ~ 16024382 (-) False LOC110495656
TU1742041 other downstream 121690 16022467 ~ 16024354 (-) False LOC110495656
TU1742232 other upstream 253786 16418250 ~ 16418918 (-) True G1521712
TU1742516 other upstream 773188 16937652 ~ 16942594 (-) True LOC110495686
TU1742514 other upstream 844918 17009382 ~ 17011378 (-) True LOC118941063
TU1743542 other upstream 1277195 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 1477954 17642418 ~ 17669959 (-) False LOC110528763

Expression Profile