RNA id: XR_005037387.1


Basic Information

Item Value
RNA id XR_005037387.1
length 1518
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110495664
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16169245 ~ 16171657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCATGTCTGCTAGGCAGGCAGGCTAAAGACAGCCAGAGTGAGTCAACATACTACACGACTGTCTTGTCTGTAGCTACAAAAAAACTAGCAAAAAGGCTCAAACTTTAGAGCGTCTCTTTGACGGAAGCGATACTCTGCGCAGTTTCATCAAGTAGGTTATTATGTTGCACAGGCTGTTGTCTGAGTGGCGCAAAACTCTTATTTTTAAGACGCAATCATGTTTATCACAAGTTACTGGTATGTTATGTGTGCTGATTACAAACCAgcatttcacaataaaacataatgTTACGACACTGCTAATAAATAATAAGACATTCGCACAAGTAGGCTGCGTTTTCGTACACCATAACTGTAATATGTGATTGCAGAAGACCTATTTGCAGGTCCATAACATTATGGTACattttagctgtgtgtgtgggtgggtggcttTAGCATAATAAATAGGGAGTttccagggttgggtaggttacatGTAGTCAGTTACTCCCCAACTCTTGGGGTTTCCACTTCTGCCTCCCAATGATGACGTTATAGGCCTATTGTATTGGCAAGGAGAGAGATTTTAACAGCTGAAATTGTATCTCGTAACCCTCACTTCTCCCCTTTATTTTGGCATCATTTTATTTTAAGGGCTTTACATAAATCACACTTAACATAATTCCCACATAGGGATTAAATGACACATTTAAAAGTGCATGTAAACTGAGTAACTGTTATTGTGAATGCATCACGTTCAATGTCAATAGGGTTATGTTGATCCATTTAGAATGTTAACCTCTAACCTGGACACTAGTTCACTTTCACCTGTATGATGTCTGGTTTTTCAAATGAACAGCTACAGAAAAGTGGGAGAGTTTCTTGTGTTGATGCCGGACAAGTCCACTATACCTGACTCCATCACATGCATCCTATGGAAGCATGGCTTGAACAAGACAGCAGAGTTTGACAAGGATTTTGGGCTGTACACCTATGGTGGCTTCGAACGTGGCACAACCATGGACCAGGCTACTGGAGAGCTGAGAATCACCAGTTTGATGAAAACAGACAATGGCGTTTGTTCTGTGGAGTTTAACAGCATACTGCTTGACCAGACATATACACTGTCTGTTTTCAGtaagcgtgtgtgtatgtgtgtacgACACAGTATCACAACCTGAAGTCACCTGTGAATGGAACAGTACCATGGCAACACTTTGCTGCAGTGCTGAGTGTCCGCTGGTGGTGTACCGTTGGTCTTGGCCTGAGCACCAGGGGGAGATGTGGAGCCAGCTGGTGCTGTGATTGGTGTCTTGGCTTCTGATCTATTGgctgttcatccatgtttctcatcTGCTGGAAGTGTTCCGAAGTAACCAAGGCAAAGTGAATGGAGATTCTGAGAGAAGTGACCCCCAGGTGATACTCTCCAACCCAGCTCCAACATCCCTGGTTCTCTAGTTATGATACGCaaagtttttatttaacctttattcaaccaggcaagtcagataagaataaattcttatttacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742052 lncRNA downstream 78943 16089600 ~ 16090302 (-) True G1521550
TU1742050 lncRNA downstream 79286 16088233 ~ 16089959 (-) False G1521550
TU1742088 lncRNA downstream 114225 16054745 ~ 16055020 (-) True G1521584
TU1742087 lncRNA downstream 114834 16054019 ~ 16054411 (-) True G1521583
TU1742086 lncRNA downstream 117004 16046943 ~ 16052241 (-) True G1521582
TU1742058 lncRNA upstream 61744 16233401 ~ 16233899 (-) True LOC118941103
TU1742200 lncRNA upstream 163238 16334895 ~ 16335197 (-) True G1521683
TU1742211 lncRNA upstream 173395 16345052 ~ 16345240 (-) True G1521692
TU1742210 lncRNA upstream 174441 16346098 ~ 16346458 (-) True G1521691
TU1742214 lncRNA upstream 182557 16354214 ~ 16354733 (-) True G1521695
XM_036952005.1 mRNA downstream 4781 16135076 ~ 16164464 (-) False LOC110495662
XM_021571008.2 mRNA downstream 4781 16146044 ~ 16164464 (-) False LOC110495662
XM_036952004.1 mRNA downstream 4781 16146044 ~ 16164464 (-) True LOC110495662
XM_021571012.2 mRNA downstream 43118 16118101 ~ 16126127 (-) True LOC110495663
XM_021570997.2 mRNA downstream 144867 16022566 ~ 16024378 (-) False LOC110495656
XR_005037385.1 mRNA upstream 9553 16181210 ~ 16210358 (-) False LOC110495661
XM_036952006.1 mRNA upstream 17216 16188873 ~ 16210356 (-) False LOC110495661
XM_036952007.1 mRNA upstream 17216 16188873 ~ 16210360 (-) True LOC110495661
XR_005037389.1 mRNA upstream 49537 16221194 ~ 16224343 (-) True LOC118941105
XM_036952008.1 mRNA upstream 56385 16228042 ~ 16236785 (-) False LOC118941103
TU1742040 other downstream 84279 16055128 ~ 16084966 (-) True G1521546
TU1742043 other downstream 144863 16022606 ~ 16024382 (-) False LOC110495656
TU1742041 other downstream 144891 16022467 ~ 16024354 (-) False LOC110495656
TU1742232 other upstream 246593 16418250 ~ 16418918 (-) True G1521712
TU1742516 other upstream 765995 16937652 ~ 16942594 (-) True LOC110495686
TU1742514 other upstream 837725 17009382 ~ 17011378 (-) True LOC118941063
TU1743542 other upstream 1270002 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 1470761 17642418 ~ 17669959 (-) False LOC110528763

Expression Profile