RNA id: XM_021571045.2


Basic Information

Item Value
RNA id XM_021571045.2
length 4457
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110495676
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16486853 ~ 16496136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGACAAGCTCCGCCTATTCGTTCCATGTCAGAAGATATAGGAAGAAGCCTAGCTTCGCTGTTCAGAAACATACAGCATCAAATCATCATACGTATTTGCCTTGACTGGTGACGTTTGCTACATTttacattcaattgattgaatgGCAACGACGGATACTGTACAGTCGAACCAATATTTGAAACCAACCTGTGCTGCTTCATGCAACTGTAAAGGATATCGCGATGTAAGGGAAGCCAACACACAAACCGACACCAAAGTACAAGATCATGGACCCAGGCTGTCCAAGTTTAACCTCTTCACCCTGCTGAGTTTATGGATGGAACTTTTCCCCAAGGAGGAACCAGAAGACATAAACCAGAATGACTTTACGCGGGGTACAGGCCTGGTGGTGGTTCGGGACCAGAGGGTGGTGGGTCTCCACTGCTCCGGTCCAGAGCTCCACGTGGGGCAGGTAGCTGTGATCAGACACGGGCCCAGGCTGGCTGCCTCAGACCTCTACTTCTCTAGGAGACCCTGCGCTACCTGCCTCAAGATGCTTATCAATGCTGGGGTGAGCCGCATCTCCTTCTGGCCTGGTGACCCTGAGATGAGTCTGCTAGCGGTCAGGCCTAATGGGACGGACTCCATTTCCCAGGAGGCCATGTGGGACGCAATTGCGTCCGAGAAGCTGAAGTCCAACAGCCGGCCCCACATTAGTGTGGTGGTGCAGCCCGTGGCCCCTGGCCTGCAGCAGTTTGTGGAGGAGACCTCCAGGGGGTGTGACTTCATGGAGAGGGTGTCGGGGGACGACCCCGAATTGGACGCTGGGGACTTCTACAGGAAGCAGAGGAGACGGAACCTGGACACTTTCTCCGAAGAGTTCCTAATCCCACACGAACAGTGCCACCGTGACATTCTCACCAAAATAGGTCTGGAGAACTTCTCCACGGAGCCGTACTTCTCCAACCTGCGTCAGAACATGAGGGAGCTGGTCGGGGTTCTGGCCTCAGTAGCTGCTAGTGTGCCTCTTCTccagcatggattctacaagaAGGACTCCCAGCCTGCAACCTCAGAGCAGCCCCAGCCTCAGGGGGTGTCCCAGGAGATTGCCAGACACTGCATCGTACAGGCCAGACTGTTGGCCTACAGAACAGAGGACCCTAAGGTTGGGGTTGGTGCTGTCATTTGGGCAGAAGGGAAATCAGGTGGTTGTGATGGCACGGGGCGGCTGTACCTGGTGGGTTGTGGGTACAACGCCTACCCAGTGGGCTCAGAGTACGGACAGTACCCCCAGATGGACACCAAACAGCAGGACCGCCAGAGGAGGAAGTACCGCTACATCATCCACGCTGAGCAGAACGCACTCACCTTCAGGAGTGAAGAGATCCGTGAGGAGGAGAACACCATGCTGTTTGTGACTAAGTGTCCGTGTGATGAGTGTGTCCCTCTGATCCGAGGAGCTGGGATCAAGCAGATCTACACCACTGACCTGGACAGCGGCAAAGACAAGGGAGACATCTCCTACCTCAGATTCCACGGCCTCCAAGGAGTCCTGAAGTTAATTTGGCAGAAGTCCTCTCTAGCCAGGAGAGACGCTGAACATGCTGGTCTTCATCTAGCCAatggatgtgtggggAAGCATGGGAGACAGCCTGAACAGGCCCTTCAATCCAACAAGAGGTTACGGTCGGCAACAAATCCAGACCTTTCTCCTGTTTGTTGAACAATGGTACCTGTAGCTTTCAGTCTGGTTTCACCAGGCTATGGTCCCCAGGCTCTTGTTGGCATTGGAAACGTTTAATTTATCCAATCGCATATTGATCAGTGATTCAAGTAAGGAAGGATGCAttttaacttcttggcgcacccatcccgttagcgggatcattttcgtcaacatccgctcaattgcagagcgccaaattcaaattaaattacaaaaaatataaaatgttcatgaaatcacaagtgcaatatagcaaaacacagcttagcttgttgttaatccacctggcatgtcagatttcaaaaagctttacggcaaaagctatccaagcgtttatgttaggacatctctctctcagcagaaaaaacattacaaacagctagcagcaaagtagattggtcacaaaagtcaaaaaacaataaaatgaatcacttacctttgatcttcggatgtttgcactcaggAAACTccaagttacacaataaatgttccaataaagattatttttatatccaaaatacctccatttggttggcgcgttttgttcagaaatccacaggctcgagcggtcacgatggggcagacgaaaattccaaatagtatctgtaaagtttgtagaaacatgtcaaacgttttttttaatcaagccttgtttttacaataaataatcaatatttcaaccggatcatagctttttcaataggagagagagaaagtctgctccaagctgctccAAGATGTGATCCTTCTCGATactttttcagaataaaagcctgaaactatgtataaagactgttcacaccatgtggaagccatagggaaaggaatctggttgatatctctttaaatggagggaaggcatgcaatggaactgggagatttgtttctcttcggcacttccttgttggattttcctcaggttttcgcctgcaatatcagttctgttatactcagacaatatttagacagttttggaaacttgagtgtttatcctaatctgacaattatatgcatattctgggcctgagaaataggcagtttcatttgggtacgtttttcatccaaacatcaaaatactgccccctacactcaacaggttaacatTGTTGGAAATTCAAAGGCCTCTTCATACTCCCCTGTAATGGACAGTTTCAAGGAGTGACTGTATATTCAAAGGAAATGGTACTaggtagatttttttttaattgcaaaGCTTGTATGTATAAGTGAACTGTAAATGCGTGTTTCCTAATTGTTTGTCTGAAGAGTTTACAATGAAAGTTGTATGAAGGCTATTGTTGATTGTAGCTTTAAGTTTACTATAGTTCTTCCAGACTTGAAGAATATAAGTCACATTCCAGCCAGTGCAGGCTACCACCACTATATTGCACTTTGCCTCAAAGGATACTAACTCCTAGACCCCTGCAACTGTGCTTTGTCTGTTTCTTTGTTACATGGTTGGCTCCTACATCCTTGAATTGTTTCATCCTGTTTTGCCAAACTGCTTTTAACTGATAACAATAAGCAtctaacaacaaaaaatatatataaaatgacaAACCAGGAAAACAATGTATGCATTTATTTTATTGGTGTTGTGGTACAGTAGTATCAAtgggattaaaaataataataattccatgGTTGAAAAGGGTCAATATTACTTTAGTACAGTATGTTAATAAGTAAACCTGTTTTGGCTCAGGTATAAGTTCCTACTGATACAGCCTGAATCTAAGTCTCTTGTTTATCATTTTAATCCAACATCAGTTTGCCATTCAAaaccctgtttatacctggtgtTAATGTGGGTCCTGTGTCTTGATCTTGTCCATATTCTGATTATGACCATTTCTAGACCTGTGTAGAATATTACAATTATTGATGGTGATTCTTCCTGACTACCTCCAGAGGCCATCGAGGACTAATTGTATCTTTATTTTACAAGTGTAAACAGATCTGGATTGTCAAACCATTAATAGTCCTTCATTGATTCAAGGGATCTTAACATTGGGAATCTCATAATTTGAATACAGGGAGGGACTAGGGTTCAAAATATACCTTTTGAGAAAGGTCATTGGCATGGCAAGACTTGAACCTGTGACCTTGTGGTCCTAGCCCACAGCACCAGCAGGGAGGGCACCATTATTGTTTTTGTACATTTTATAAAGCTGTTCATTCCTTTTGTCATTTTAGAATGTCAGATAACATTTAAGTAGGTTGGAAAACAAAAGCTGCATTGGGATGCAAGCCGTTTAACACCCTCCCACAAGCAGTCCACCTCCCTGAAACACTTGTCTTTACTTGTAAACTCCACCCACTGACATGTTACTAAGCTCTGCCCACGGAACTTTCATCGAACCAATCAATTTGTCCCCGGCTACCTCgaggtggtcaggaagatctGTTCACATGTTAGCACCAGATATAGAACAGGGCTAGAATGACTGAGTTTCACCAAAACGACAAGGGCATTGAGGACACTATCCCTTGTGTGTCAAGTCCAATCtagaaatgtttttttaaaaatgtaaaagtaTTTGGCAATTTAAAGAACAATCACTTGTCCCATGGCATGGTGCCCATCACATTTATTATTCAATATTACATTGAAGAGCCATATTAGTTCATATTTTCAATTTAGATGTGATCGTAACTTAAGCTCAACCACCACAATTAAAATATGCATTGGCTCAATTTGTCTGAGGTTATTTAATTTAGAGTTCCCCCAAAACAAgctacatg

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741347 lncRNA upstream 47460 16438959 ~ 16439393 (+) True G1520973
TU1741342 lncRNA upstream 54924 16431721 ~ 16431929 (+) True G1520968
TU1741315 lncRNA upstream 55443 16427597 ~ 16431410 (+) True LOC110495673
TU1741338 lncRNA upstream 74278 16412220 ~ 16412575 (+) True G1520964
TU1741287 lncRNA upstream 143919 16338456 ~ 16342934 (+) True LOC110495668
TU1741387 lncRNA downstream 19970 16516106 ~ 16516354 (+) True G1521008
TU1741408 lncRNA downstream 43692 16539828 ~ 16540341 (+) True G1521026
TU1741435 lncRNA downstream 87529 16583665 ~ 16583951 (+) True G1521053
TU1741437 lncRNA downstream 88013 16584149 ~ 16586203 (+) False G1521054
TU1741438 lncRNA downstream 88013 16584149 ~ 16586203 (+) True G1521054
XM_021571043.2 mRNA upstream 549 16476472 ~ 16486304 (+) True LOC110495675
LOC110495678 mRNA upstream 12753 16471104 ~ 16474100 (+) True LOC110495678
XM_021571041.2 mRNA upstream 18400 16454118 ~ 16468453 (+) False LOC110495674
XM_021571040.2 mRNA upstream 18400 16454120 ~ 16468453 (+) False LOC110495674
XM_036952032.1 mRNA upstream 55500 16427974 ~ 16431353 (+) False LOC110495673
XM_036952049.1 mRNA downstream 117513 16613649 ~ 16678996 (+) False LOC110495683
XM_036952047.1 mRNA downstream 117513 16613649 ~ 16680882 (+) False LOC110495683
XM_036952048.1 mRNA downstream 117513 16613649 ~ 16680897 (+) False LOC110495683
XM_036952043.1 mRNA downstream 117513 16613649 ~ 16683077 (+) False LOC110495683
XM_036952044.1 mRNA downstream 117513 16613649 ~ 16683077 (+) False LOC110495683
TU1741359 other upstream 18430 16465513 ~ 16468423 (+) True LOC110495674
TU1741077 other upstream 548035 15938230 ~ 15938818 (+) False G1520748
TU1741078 other upstream 548035 15938401 ~ 15938818 (+) True G1520748
TU1741071 other upstream 563954 15919157 ~ 15922899 (+) True G1520742
TU1740883 other upstream 686972 15796352 ~ 15799881 (+) True LOC110495644
TU1742927 other downstream 1127680 17623816 ~ 17627644 (+) False LOC110527374
TU1743047 other downstream 1270083 17766219 ~ 17766694 (+) True G1522415
TU1743076 other downstream 1343533 17839669 ~ 17844014 (+) False G1522437
TU1743077 other downstream 1343533 17839669 ~ 17844014 (+) False G1522437
TU1743079 other downstream 1343533 17839669 ~ 17844014 (+) True G1522437

Expression Profile